January 2015 - Echobase-commits - mailman.cloud.codelutin.com

branch master updated (57e5d46 -> 0e157a3)
by codelutin.com scm Jan. 20, 2015

Jan. 20, 2015

This is an automated email from the git hooks/post-receive script. New change to branch master in repository echobase. See http://git.codelutin.com/echobase.git from 57e5d46 Merge branch 'release/2.7.2' adds eede296 [jgitflow-maven-plugin]updating develop poms to master versions to avoid merge conflicts adds 3076588 Merge branch 'master' into develop adds 97470c0 [jgitflow-maven-plugin]Updating develop poms back to pre merge state adds ee4029f refs-50 #6462 Amélioration de la documentation d'installation adds 83d687d fix rst adds 9845bfa improve lizmap configuration options adds 4c2f27a fixes #6456: Ne plus rafraichir les données spatiales à la fin d'un import adds c22d33f refs-50 #6457: Proposer de rafraichir les données spatiales sur la page de visualisation des données spatiales adds 7243107 fixes #6463: Impossible de cloner une configuration de base de travail adds a4c2fa4 add plugin version adds 4b3f74e review gis templates adds 8134c36 change map ulr option for lizmap adds d5540af review Lizmap service adds c1fe8f0 fixes #6271 + #6457 adds 17f20f0 fixes #6271 + #6457 adds 3599750 fixes #6271 cusotmize lizmap css adds caa31d7 fixes #6458: Ne pas importer les résultats avec valeurs *NA* sur les résultats de type Région adds 9daf16e fixes #6460: Afficher les logs d'excution des script R adds 72ab470 use mavenpom 1.8.1 adds 1dd83b9 add license headers adds f36d7f4 [jgitflow-maven-plugin]updating poms for branch'release/2.8' with non-snapshot versions adds 0e157a3 Merge branch 'release/2.8' No new revisions were added by this update. Summary of changes: echobase-domain/pom.xml | 2 +- .../echobase/config/EchoBaseConfiguration.java | 12 +- .../config/EchoBaseConfigurationOption.java | 26 +- .../fr/ifremer/echobase/io/CommandLineUtils.java | 52 ++-- .../i18n/echobase-domain_en_GB.properties | 7 +- .../i18n/echobase-domain_fr_FR.properties | 12 +- echobase-services/pom.xml | 2 +- .../services/service/UserDbPersistenceService.java | 33 +++ .../exportCoser/ExportCoserConfiguration.java | 10 + .../service/exportCoser/ExportCoserService.java | 7 +- .../GenerateCoserMapException.java} | 25 +- .../importdata/AbstractImportDataService.java | 24 -- .../importdata/ResultsEsduCellImportService.java | 8 +- .../ResultsMapFishCellImportService.java | 7 +- .../ResultsMapOtherCellImportService.java | 2 +- .../services/service/importdb/ImportDbService.java | 22 +- .../services/service/spatial/GisService.java | 192 ++---------- .../services/service/spatial/LizmapRepository.java | 326 +++++++++++++++++++++ .../service/spatial/SpatialDataService.java | 57 ++-- .../gis/templates/EchoBaseLizmapTemplate.qgs.cfg | 302 +++++++++++-------- .../gis/templates/EchoBaseQGisTemplate.qgs | 268 +++++++++-------- echobase-ui/pom.xml | 69 ++--- .../assembly/lizmap/www/themes/default/css/map.css | 8 + .../echobase/ui/EchoBaseApplicationContext.java | 2 +- .../ui/actions/AbstractWaitAndExecAction.java | 2 +- .../echobase/ui/actions/exportCoser/Export.java | 19 +- ...shSpatialViews.java => ComputeSpatialData.java} | 8 +- .../ifremer/echobase/ui/actions/spatial/Show.java | 51 +++- .../spatial/{Show.java => ShowVoyageMap.java} | 71 ++++- .../src/main/resources/config/struts-spatial.xml | 13 +- echobase-ui/src/main/resources/echobase.properties | 3 + .../resources/i18n/echobase-ui_en_GB.properties | 3 +- .../resources/i18n/echobase-ui_fr_FR.properties | 3 +- .../src/main/webapp/WEB-INF/jsp/spatial/show.jsp | 60 ++-- .../jsp/spatial/{show.jsp => showVoyageMap.jsp} | 57 ++-- .../main/webapp/WEB-INF/jsp/workingDb/manage.jsp | 14 +- pom.xml | 14 +- src/site/en/rst/exportCoser.rst | 1 + src/site/rst/exportCoser.rst | 1 + src/site/rst/install.rst.vm | 73 ++--- 40 files changed, 1147 insertions(+), 721 deletions(-) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/{exportquery/ExportQueryInvalidNameException.java => exportCoser/GenerateCoserMapException.java} (61%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/spatial/LizmapRepository.java rename echobase-ui/src/main/java/fr/ifremer/echobase/ui/actions/spatial/{RefreshSpatialViews.java => ComputeSpatialData.java} (87%) copy echobase-ui/src/main/java/fr/ifremer/echobase/ui/actions/spatial/{Show.java => ShowVoyageMap.java} (65%) copy echobase-ui/src/main/webapp/WEB-INF/jsp/spatial/{show.jsp => showVoyageMap.jsp} (58%) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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[ANN] - EchoBase 2.8 released
by codelutin.com Release Notification Jan. 20, 2015

Jan. 20, 2015

The EchoBase team is pleased to announce the echobase-2.8 release! The French Institute for the Exploitation of the Sea (Ifremer) has designed an open software suite for storing fisheries acoustic data and computing acoustic indicators for survey-based ecosystem monitoring. It comprises a postgreSQL database designed to store acoustic, navigation and fishing data from ecosystemic surveys (EchoBase) and a suite of R codes (EchoR) for computing fish population indicators based on Echobase data. Documentation of the project can be found here: https://echobase.codelutin.com Changes ------- Changes in this version include: New features: o Afficher les logs d'excution des script R Issue: 6460. Thanks to Tony Chemit. Resolved by tchemit. o Amélioration de la documentation d'installation Issue: 6462. Thanks to Tony Chemit. Resolved by tchemit. o Finaliser la visualisation des données spatialisées Issue: 6271. Thanks to Tony Chemit. Resolved by tchemit. o Ne pas importer les résultats avec valeurs *NA* sur les résultats de type Région Issue: 6458. Thanks to Tony Chemit. Resolved by tchemit. o Ne plus rafraichir les données spatiales à la fin d'un import Issue: 6456. Thanks to Tony Chemit. Resolved by tchemit. o Interdire l'import de resultats (autre que Région) avec valeurs *NA* Issue: 6459. Thanks to Tony Chemit. Resolved by tchemit. o Proposer de rafraichir les données spatiales sur la page de visualisation des données spatiales Issue: 6457. Thanks to Tony Chemit. Resolved by tchemit. Fixed Bugs: o Impossible de cloner une configuration de base de travail Issue: 6463. Thanks to Tony Chemit. Resolved by tchemit. Downloads --------- For a manual installation, you can download files here: http://forge.codelutin.com/projects/echobase/files * echobase-embedded-2.8.zip - http://forge.codelutin.com/attachments/download/2764 * echobase-referentiel-2.8.echobase - http://forge.codelutin.com/attachments/download/2765 * echobase-ui-2.8-full.war - http://forge.codelutin.com/attachments/download/2766 * echobase-ui-2.8-lizmap.zip - http://forge.codelutin.com/attachments/download/2767 Maven artifacts --------------- Artifacts are deployed in nuiton maven repository http://maven.nuiton.org/other-releases/ Have fun! -EchoBase team

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branch release/2.8 created (now 72ab470)
by codelutin.com scm Jan. 20, 2015

Jan. 20, 2015

This is an automated email from the git hooks/post-receive script. New change to branch release/2.8 in repository echobase. See http://git.codelutin.com/echobase.git at 72ab470 use mavenpom 1.8.1 No new revisions were added by this update. -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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branch develop updated (72ab470 -> 2933074)
by codelutin.com scm Jan. 20, 2015

Jan. 20, 2015

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See http://git.codelutin.com/echobase.git from 72ab470 use mavenpom 1.8.1 new 2933074 [jgitflow-maven-plugin]updating poms for 2.9-SNAPSHOT development The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 2933074d7dd2026ef2cc038e39a99aec4f41a53c Author: Maven Release <maven-release(a)codelutin.com> Date: Tue Jan 20 17:31:59 2015 +0000 [jgitflow-maven-plugin]updating poms for 2.9-SNAPSHOT development Summary of changes: echobase-domain/pom.xml | 2 +- echobase-services/pom.xml | 2 +- echobase-ui/pom.xml | 2 +- pom.xml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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branch develop updated (9daf16e -> 72ab470)
by codelutin.com scm Jan. 20, 2015

Jan. 20, 2015

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See http://git.codelutin.com/echobase.git from 9daf16e fixes #6460: Afficher les logs d'excution des script R new 72ab470 use mavenpom 1.8.1 The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 72ab47074361c2cc7338004b0e07a3b9f4016ee6 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Tue Jan 20 18:15:28 2015 +0100 use mavenpom 1.8.1 Summary of changes: pom.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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branch develop updated (caa31d7 -> 9daf16e)
by codelutin.com scm Jan. 20, 2015

Jan. 20, 2015

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See http://git.codelutin.com/echobase.git from caa31d7 fixes #6458: Ne pas importer les résultats avec valeurs *NA* sur les résultats de type Région new 9daf16e fixes #6460: Afficher les logs d'excution des script R The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 9daf16e1e5de051961443830690f9b55c1ce8914 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Tue Jan 20 18:12:44 2015 +0100 fixes #6460: Afficher les logs d'excution des script R Summary of changes: .../fr/ifremer/echobase/io/CommandLineUtils.java | 52 +++++++++++----------- .../exportCoser/ExportCoserConfiguration.java | 10 +++++ .../service/exportCoser/ExportCoserService.java | 7 ++- .../exportCoser/GenerateCoserMapException.java | 25 +++++++++++ .../ui/actions/AbstractWaitAndExecAction.java | 2 +- .../echobase/ui/actions/exportCoser/Export.java | 19 +++++++- 6 files changed, 87 insertions(+), 28 deletions(-) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/exportCoser/GenerateCoserMapException.java -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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branch develop updated (3599750 -> caa31d7)
by codelutin.com scm Jan. 15, 2015

Jan. 15, 2015

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See http://git.codelutin.com/echobase.git from 3599750 fixes #6271 cusotmize lizmap css new caa31d7 fixes #6458: Ne pas importer les résultats avec valeurs *NA* sur les résultats de type Région The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit caa31d7187ae5403b6400673da063f6d7d9aff8f Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 17:05:38 2015 +0100 fixes #6458: Ne pas importer les résultats avec valeurs *NA* sur les résultats de type Région Summary of changes: .../service/importdata/AbstractImportDataService.java | 15 --------------- .../service/importdata/ResultsEsduCellImportService.java | 8 ++++---- .../importdata/ResultsMapFishCellImportService.java | 7 +------ .../importdata/ResultsMapOtherCellImportService.java | 2 +- 4 files changed, 6 insertions(+), 26 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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branch develop updated (17f20f0 -> 3599750)
by codelutin.com scm Jan. 15, 2015

Jan. 15, 2015

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See http://git.codelutin.com/echobase.git from 17f20f0 fixes #6271 + #6457 new 3599750 fixes #6271 cusotmize lizmap css The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 35997502fe056372d6bbeb3f5a3e95b7acaf8d83 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 16:13:39 2015 +0100 fixes #6271 cusotmize lizmap css Summary of changes: .../src/main/assembly/lizmap/www/themes/default/css/map.css | 8 ++++++++ 1 file changed, 8 insertions(+) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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branch develop updated (c1fe8f0 -> 17f20f0)
by codelutin.com scm Jan. 15, 2015

Jan. 15, 2015

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See http://git.codelutin.com/echobase.git from c1fe8f0 fixes #6271 + #6457 new 17f20f0 fixes #6271 + #6457 The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 17f20f0a79bdb831f02d9a2bd7e4f6b860335a72 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 13:59:29 2015 +0100 fixes #6271 + #6457 Summary of changes: .../ui/actions/spatial/ComputeSpatialData.java | 2 +- .../ifremer/echobase/ui/actions/spatial/Show.java | 42 +++--- .../echobase/ui/actions/spatial/ShowVoyageMap.java | 162 ++++++++++++++++++++- .../src/main/resources/config/struts-spatial.xml | 13 +- .../resources/i18n/echobase-ui_en_GB.properties | 3 +- .../resources/i18n/echobase-ui_fr_FR.properties | 3 +- .../src/main/webapp/WEB-INF/jsp/spatial/show.jsp | 44 ++++-- .../webapp/WEB-INF/jsp/spatial/showVoyageMap.jsp | 106 ++++++++++++++ 8 files changed, 331 insertions(+), 44 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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branch develop updated (97470c0 -> c1fe8f0)
by codelutin.com scm Jan. 15, 2015

Jan. 15, 2015

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See http://git.codelutin.com/echobase.git from 97470c0 [jgitflow-maven-plugin]Updating develop poms back to pre merge state new ee4029f refs-50 #6462 Amélioration de la documentation d'installation new 83d687d fix rst new 9845bfa improve lizmap configuration options new 4c2f27a fixes #6456: Ne plus rafraichir les données spatiales à la fin d'un import new c22d33f refs-50 #6457: Proposer de rafraichir les données spatiales sur la page de visualisation des données spatiales new 7243107 fixes #6463: Impossible de cloner une configuration de base de travail new a4c2fa4 add plugin version new 4b3f74e review gis templates new 8134c36 change map ulr option for lizmap new d5540af review Lizmap service new c1fe8f0 fixes #6271 + #6457 The 11 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit c1fe8f0aeb10021f1fb6da9b04a951b867d4b601 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 13:58:37 2015 +0100 fixes #6271 + #6457 commit d5540af0fef35e75b70b261621cada0c1163bbbf Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 13:50:42 2015 +0100 review Lizmap service commit 8134c36471755d179766fd840c482a5aec890dd8 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 13:50:20 2015 +0100 change map ulr option for lizmap commit 4b3f74ec47217066005df4ffdc24d700757120c7 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 13:49:30 2015 +0100 review gis templates commit a4c2fa45f6ad4cedb4e3740e7bc29b6603d8751f Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Jan 15 13:47:26 2015 +0100 add plugin version commit 7243107ebbecf4d4ab2f876a160e681d5b4b6570 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Wed Jan 14 16:05:18 2015 +0100 fixes #6463: Impossible de cloner une configuration de base de travail commit c22d33f3490f37d69582150563fed60747996af5 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Wed Jan 14 15:34:19 2015 +0100 refs-50 #6457: Proposer de rafraichir les données spatiales sur la page de visualisation des données spatiales commit 4c2f27a03dc226ca3ff1f6830759b9583874513d Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Wed Jan 14 15:33:52 2015 +0100 fixes #6456: Ne plus rafraichir les données spatiales à la fin d'un import commit 9845bfa35690e46b800dcaf6641cd027b8160402 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Wed Jan 14 15:05:22 2015 +0100 improve lizmap configuration options commit 83d687d72647f009e39fc0810aac09cb666598ba Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Wed Jan 14 15:04:44 2015 +0100 fix rst commit ee4029f4a999dab04ca0185b13e062d6ee4ebaeb Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Wed Jan 14 15:03:56 2015 +0100 refs-50 #6462 Amélioration de la documentation d'installation Summary of changes: .../echobase/config/EchoBaseConfiguration.java | 12 +- .../config/EchoBaseConfigurationOption.java | 26 +- .../i18n/echobase-domain_en_GB.properties | 7 +- .../i18n/echobase-domain_fr_FR.properties | 12 +- .../services/service/UserDbPersistenceService.java | 33 +++ .../importdata/AbstractImportDataService.java | 9 - .../services/service/importdb/ImportDbService.java | 22 +- .../services/service/spatial/GisService.java | 192 ++----------- .../services/service/spatial/LizmapRepository.java | 305 +++++++++++++++++++++ .../service/spatial/SpatialDataService.java | 57 ++-- .../gis/templates/EchoBaseLizmapTemplate.qgs.cfg | 302 +++++++++++--------- .../gis/templates/EchoBaseQGisTemplate.qgs | 268 +++++++++--------- echobase-ui/pom.xml | 67 ++--- .../echobase/ui/EchoBaseApplicationContext.java | 2 +- ...shSpatialViews.java => ComputeSpatialData.java} | 8 +- .../ifremer/echobase/ui/actions/spatial/Show.java | 19 ++ .../echobase/ui/actions/spatial/ShowVoyageMap.java | 10 + echobase-ui/src/main/resources/echobase.properties | 3 + .../src/main/webapp/WEB-INF/jsp/spatial/show.jsp | 36 ++- .../webapp/WEB-INF/jsp/spatial/showVoyageMap.jsp | 0 .../main/webapp/WEB-INF/jsp/workingDb/manage.jsp | 14 +- pom.xml | 10 + src/site/en/rst/exportCoser.rst | 1 + src/site/rst/exportCoser.rst | 1 + src/site/rst/install.rst.vm | 73 ++--- 25 files changed, 894 insertions(+), 595 deletions(-) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/spatial/LizmapRepository.java rename echobase-ui/src/main/java/fr/ifremer/echobase/ui/actions/spatial/{RefreshSpatialViews.java => ComputeSpatialData.java} (87%) create mode 100644 echobase-ui/src/main/java/fr/ifremer/echobase/ui/actions/spatial/ShowVoyageMap.java copy README.txt => echobase-ui/src/main/webapp/WEB-INF/jsp/spatial/showVoyageMap.jsp (100%) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

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