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r3459 - isis-fish/trunk
by tchemit＠users.labs.libre-entreprise.org Aug. 19, 2011

Aug. 19, 2011

Author: tchemit Date: 2011-08-19 16:32:50 +0000 (Fri, 19 Aug 2011) New Revision: 3459 Log: Update mavenpom4labs to 3.0.2. Modified: isis-fish/trunk/pom.xml Modified: isis-fish/trunk/pom.xml =================================================================== --- isis-fish/trunk/pom.xml 2011-08-16 23:15:50 UTC (rev 3458) +++ isis-fish/trunk/pom.xml 2011-08-19 16:32:50 UTC (rev 3459) @@ -6,7 +6,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4labs</artifactId> - <version>3.0.1</version> + <version>3.0.2</version> </parent> <groupId>fr.ifremer</groupId>

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r3458 - isis-fish/trunk
by tchemit＠users.labs.libre-entreprise.org Aug. 16, 2011

Aug. 16, 2011

Author: tchemit Date: 2011-08-16 23:15:50 +0000 (Tue, 16 Aug 2011) New Revision: 3458 Log: Update mavenpom4labs to 3.0.1. Modified: isis-fish/trunk/pom.xml Modified: isis-fish/trunk/pom.xml =================================================================== --- isis-fish/trunk/pom.xml 2011-08-04 09:55:13 UTC (rev 3457) +++ isis-fish/trunk/pom.xml 2011-08-16 23:15:50 UTC (rev 3458) @@ -6,7 +6,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4labs</artifactId> - <version>3.0</version> + <version>3.0.1</version> </parent> <groupId>fr.ifremer</groupId>

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r3457 - isis-fish/trunk
by tchemit＠users.labs.libre-entreprise.org Aug. 4, 2011

Aug. 4, 2011

Author: tchemit Date: 2011-08-04 09:55:13 +0000 (Thu, 04 Aug 2011) New Revision: 3457 Log: Update mavenpom4labs to 3.0. Modified: isis-fish/trunk/pom.xml Modified: isis-fish/trunk/pom.xml =================================================================== --- isis-fish/trunk/pom.xml 2011-07-20 14:44:55 UTC (rev 3456) +++ isis-fish/trunk/pom.xml 2011-08-04 09:55:13 UTC (rev 3457) @@ -6,7 +6,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4labs</artifactId> - <version>2.5.5</version> + <version>3.0</version> </parent> <groupId>fr.ifremer</groupId>

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r3456 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity
by chatellier＠users.labs.libre-entreprise.org July 20, 2011

July 20, 2011

Author: chatellier Date: 2011-07-20 14:44:55 +0000 (Wed, 20 Jul 2011) New Revision: 3456 Log: Defaut factor validity (true if discrete) Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityInputHandler.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityInputHandler.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityInputHandler.java 2011-07-20 14:33:09 UTC (rev 3455) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityInputHandler.java 2011-07-20 14:44:55 UTC (rev 3456) @@ -949,8 +949,8 @@ */ public void save(FactorWizardUI factorWizardUI) { - // first check is faactor is valid - boolean factorValid = false; + // first check is factor is valid + boolean factorValid = true; ContinuousPanelContainerUI continuousPanel = factorWizardUI.continuousPanel; if (continuousPanel != null) { factorValid = continuousPanel.isFactorValid();

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r3455 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity
by jcouteau＠users.labs.libre-entreprise.org July 20, 2011

July 20, 2011

Author: jcouteau Date: 2011-07-20 14:33:09 +0000 (Wed, 20 Jul 2011) New Revision: 3455 Log: debug group screening Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/FactorGroup.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/FactorGroup.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/FactorGroup.java 2011-07-20 13:29:28 UTC (rev 3454) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/FactorGroup.java 2011-07-20 14:33:09 UTC (rev 3455) @@ -277,4 +277,27 @@ public String toString() { return "FactorGroup(" + name + ")"; } + + /** + * Set value for label. + * + * @param valueIdentifier new value identifier to get + */ + @Override + public void setValueForIdentifier(Object valueIdentifier) { + identifier = valueIdentifier; + for (Factor factor : factors) { + factor.setValueForIdentifier(valueIdentifier); + } + } + + /** + * Get the factor value for displaying (for example in R). + * + * @return the value + */ + @Override + public Object getDisplayedValue() { + return identifier; + } }

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r3454 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator
by chatellier＠users.labs.libre-entreprise.org July 20, 2011

July 20, 2011

Author: chatellier Date: 2011-07-20 13:29:28 +0000 (Wed, 20 Jul 2011) New Revision: 3454 Log: Refactoring analysis > calculator Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java 2011-07-20 13:22:28 UTC (rev 3453) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java 2011-07-20 13:29:28 UTC (rev 3454) @@ -1577,14 +1577,14 @@ .getName(getSensitivityAnalysis()); result.setProperty("sensitivityanalysis", analysisName); - // calculator parameter - Properties calculatorParams = StorageHelper.getParamsAsProperties(0, + // analysis parameter + Properties analysisParams = StorageHelper.getParamsAsProperties(0, getRegion().getStorage(), getSensitivityAnalysis(), "sensitivity"); - result.putAll(calculatorParams); + result.putAll(analysisParams); } else { if (propertiesParameters != null && propertiesParameters.containsKey("sensitivityanalysis")) { - result.setProperty("sensitivitycalculator", + result.setProperty("sensitivityanalysis", propertiesParameters.getProperty("sensitivityanalysis")); for (String key : propertiesParameters.stringPropertyNames()) { if (key.startsWith("sensitivity.")) {

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r3453 - isis-fish/trunk
by chatellier＠users.labs.libre-entreprise.org July 20, 2011

July 20, 2011

Author: chatellier Date: 2011-07-20 13:22:28 +0000 (Wed, 20 Jul 2011) New Revision: 3453 Log: Update h2 Modified: isis-fish/trunk/pom.xml Modified: isis-fish/trunk/pom.xml =================================================================== --- isis-fish/trunk/pom.xml 2011-07-18 16:26:01 UTC (rev 3452) +++ isis-fish/trunk/pom.xml 2011-07-20 13:22:28 UTC (rev 3453) @@ -274,7 +274,7 @@ <dependency> <groupId>com.h2database</groupId> <artifactId>h2</artifactId> - <version>1.3.157</version> + <version>1.3.158</version> <scope>compile</scope> </dependency>

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r3452 - isis-fish/branches/isis-fish-3.3.0.x
by chatellier＠users.labs.libre-entreprise.org July 18, 2011

July 18, 2011

Author: chatellier Date: 2011-07-18 16:26:01 +0000 (Mon, 18 Jul 2011) New Revision: 3452 Log: Prepare next version Modified: isis-fish/branches/isis-fish-3.3.0.x/pom.xml Modified: isis-fish/branches/isis-fish-3.3.0.x/pom.xml =================================================================== --- isis-fish/branches/isis-fish-3.3.0.x/pom.xml 2011-07-18 16:15:00 UTC (rev 3451) +++ isis-fish/branches/isis-fish-3.3.0.x/pom.xml 2011-07-18 16:26:01 UTC (rev 3452) @@ -11,7 +11,7 @@ <groupId>fr.ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>3.3.0.9</version> + <version>3.3.0.9-SNAPSHOT</version>  <dependencies>

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r3451 - in isis-fish/branches/isis-fish-3.3.0.x: . src/main/java/fr/ifremer/isisfish
by chatellier＠users.labs.libre-entreprise.org July 18, 2011

July 18, 2011

Author: chatellier Date: 2011-07-18 16:15:00 +0000 (Mon, 18 Jul 2011) New Revision: 3451 Log: Prepare next version Modified: isis-fish/branches/isis-fish-3.3.0.x/pom.xml isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/IsisConfig.java Modified: isis-fish/branches/isis-fish-3.3.0.x/pom.xml =================================================================== --- isis-fish/branches/isis-fish-3.3.0.x/pom.xml 2011-07-18 16:13:13 UTC (rev 3450) +++ isis-fish/branches/isis-fish-3.3.0.x/pom.xml 2011-07-18 16:15:00 UTC (rev 3451) @@ -11,7 +11,7 @@ <groupId>fr.ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>3.3.0.8</version> + <version>3.3.0.9</version>  <dependencies> Modified: isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/IsisConfig.java =================================================================== --- isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2011-07-18 16:13:13 UTC (rev 3450) +++ isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2011-07-18 16:15:00 UTC (rev 3451) @@ -119,7 +119,7 @@ * migration de donnees demande automatiquement un changement de version * d'application. */ - protected final static Version version = new Version(3, 3, 0, 7); + protected final static Version version = new Version(3, 3, 0, 9); protected final static Version databaseVersion = new Version( version.getNumber(0), version.getNumber(1)); protected final static Version apiVersion = new Version(

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r3450 - in isis-fish/branches/isis-fish-3.3.0.x: . src/main/java/fr/ifremer/isisfish/simulator/launcher
by chatellier＠users.labs.libre-entreprise.org July 18, 2011

July 18, 2011

Author: chatellier Date: 2011-07-18 16:13:13 +0000 (Mon, 18 Jul 2011) New Revision: 3450 Log: Fix R parameters initialisation for sub process launch Modified: isis-fish/branches/isis-fish-3.3.0.x/changelog.txt isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java Modified: isis-fish/branches/isis-fish-3.3.0.x/changelog.txt =================================================================== --- isis-fish/branches/isis-fish-3.3.0.x/changelog.txt 2011-07-18 15:48:03 UTC (rev 3449) +++ isis-fish/branches/isis-fish-3.3.0.x/changelog.txt 2011-07-18 16:13:13 UTC (rev 3450) @@ -1,3 +1,9 @@ +isis-fish (3.3.0.9) stable; urgency=low + + * Fix R parameters initialisation for sub process launch + + -- lun. juil. 18 18:12:49 CEST 2011 + isis-fish (3.3.0.8) stable; urgency=low * Fix NullPointerException with length change matrix Modified: isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java =================================================================== --- isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java 2011-07-18 15:48:03 UTC (rev 3449) +++ isis-fish/branches/isis-fish-3.3.0.x/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java 2011-07-18 16:13:13 UTC (rev 3450) @@ -36,6 +36,7 @@ import java.net.URLClassLoader; import java.rmi.RemoteException; import java.util.ArrayList; +import java.util.List; import org.apache.commons.lang.StringUtils; import org.apache.commons.logging.Log; @@ -185,21 +186,44 @@ log.debug("classpath to use : " + classpath); } + // common args + List<String> command = new ArrayList<String>(); + command.add(java); + command.add("-Xmx1024M"); + + // jri args + String libraryPath = System.getProperty("java.library.path"); + if (StringUtils.isNotBlank(libraryPath)) { + command.add("-Djava.library.path=\"" + libraryPath + "\""); + } + String rType = System.getProperty("R.type"); + if (StringUtils.isNotBlank(rType)) { + command.add("-DR.type=\"" + rType + "\""); + } + + // common args + command.add("-classpath"); + command.add(classpath); + command.add(IsisFish.class.getName()); + command.add("--option"); + command.add("launch.ui"); + command.add("false"); + // prepare le process ProcessBuilder processBuilder = null; if (tempPrescriptFile != null) { - processBuilder = new ProcessBuilder(java, "-Xmx1024M", "-classpath", - classpath, IsisFish.class.getName(), "--option", "launch.ui", - "false", "--simulateWithSimulationAndScript", simulationId, - simulationZip.getAbsolutePath(), tempPrescriptFile.getAbsolutePath()); + command.add("--simulateWithSimulationAndScript"); + command.add(simulationId); + command.add(simulationZip.getAbsolutePath()); + command.add(tempPrescriptFile.getAbsolutePath()); } else { - processBuilder = new ProcessBuilder(java, "-Xmx1024M", "-classpath", - classpath, IsisFish.class.getName(), "--option", "launch.ui", - "false", "--simulateWithSimulation", simulationId, - simulationZip.getAbsolutePath()); + command.add("--simulateWithSimulation"); + command.add(simulationId); + command.add(simulationZip.getAbsolutePath()); } + processBuilder = new ProcessBuilder(command); processBuilder.redirectErrorStream(true); // demarrage du process

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