- Isis-fish-community-commits - mailman.cloud.codelutin.com

r41 - trunk
by echatellier＠users.forge.codelutin.com June 16, 2014

June 16, 2014

Author: echatellier Date: 2014-06-16 12:22:41 +0200 (Mon, 16 Jun 2014) New Revision: 41 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: Fix svn:ignore Modified: trunk/ Property changes on: trunk ___________________________________________________________________ Modified: svn:ignore - .classpath .project + .classpath .project .settings target

1 0

r40 - trunk
by echatellier＠users.forge.codelutin.com June 16, 2014

June 16, 2014

Author: echatellier Date: 2014-06-16 12:21:54 +0200 (Mon, 16 Jun 2014) New Revision: 40 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: Add pom for community. Fix version to latest. Added: trunk/pom.xml Added: trunk/pom.xml =================================================================== --- trunk/pom.xml (rev 0) +++ trunk/pom.xml 2014-06-16 10:21:54 UTC (rev 40) @@ -0,0 +1,105 @@ +<?xml version="1.0" encoding="UTF-8"?> +<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> + +  + <modelVersion>4.0.0</modelVersion> + +  + <groupId>fr.ifremer</groupId> + <artifactId>isis-fish-community</artifactId> + <name>IsisFish community data</name> + +  + <packaging>jar</packaging> + +  + <version>0</version> + +  + <description>Community data for Isis-fish</description> + <inceptionYear>2013</inceptionYear> + + <properties> + <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> + <project.reporting.outputDirectory>UTF-8</project.reporting.outputDirectory> + <maven.test.skip>true</maven.test.skip> + </properties> + + <organization> + <name>CodeLutin</name> + <url>http://www.codelutin.com/</url> + </organization> + + <build> + <sourceDirectory>${basedir}</sourceDirectory> + <plugins> + <plugin> + <artifactId>maven-compiler-plugin</artifactId> + <version>3.1</version> + <configuration> + <source>1.7</source> + <target>1.7</target> + <excludes> + <exclude>**/simulations/**</exclude> + <exclude>**/formules/**</exclude> + </excludes> + </configuration> + </plugin> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>exec-maven-plugin</artifactId> + <version>1.3.1</version> + <executions> + <execution> + <goals> + <goal>exec</goal> + </goals> + </execution> + </executions> + <configuration> + <classpathScope>runtime</classpathScope> + </configuration> + </plugin> + </plugins> + </build> + +  + <issueManagement> + <url>http://forge.codelutin.com/projects/isis-fish-community/issues</url> + </issueManagement> + +  + <dependencies> + <dependency> + <groupId>fr.ifremer</groupId> + <artifactId>isis-fish</artifactId> + <version>LATEST</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>fr.ifremer</groupId> + <artifactId>isis-fish-data</artifactId> + <version>LATEST</version> + <scope>compile</scope> + </dependency> + </dependencies> + + <distributionManagement> + <site> + <id>forge.codelutin.com</id> + <url>scp://forge.codelutin.com/var/lib/redmine-forge.codelutin.com/project-site/…</url> + </site> + </distributionManagement> + + <repositories> + <repository> + <id>nuiton.release</id> + <url>http://maven.nuiton.org/release</url> + </repository> + <repository> + <id>nuiton.snapshot</id> + <url>http://maven.nuiton.org/snapshot</url> + </repository> + </repositories> +</project> Property changes on: trunk/pom.xml ___________________________________________________________________ Added: svn:mime-type + text/xml Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native

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r39 - in trunk: exports rules sensitivityexports
by echatellier＠users.forge.codelutin.com June 16, 2014

June 16, 2014

Author: echatellier Date: 2014-06-16 12:04:32 +0200 (Mon, 16 Jun 2014) New Revision: 39 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: Remove use of i18n Modified: trunk/exports/BiomasseFeconde.java trunk/exports/MortalitePecheGroupe.java trunk/exports/MortalitePecheTotale.java trunk/rules/GraviteVPUE1_Ponderation.java trunk/rules/HCR_transition_MSY.java trunk/rules/Ogive_de_Tri_Merlu.java trunk/rules/TACpoids20012011.java trunk/rules/TACpoids20012011OgiveTriMerlu.java trunk/rules/TACpoids20012011TailleMin.java trunk/rules/TACpoidsPop.java trunk/rules/TACpoidsPop20082011.java trunk/rules/TACpoidsPop_PourHCR.java trunk/rules/TACpoidsTailleMin.java trunk/sensitivityexports/SensitivityBiomassJanvierY3.java trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java Modified: trunk/exports/BiomasseFeconde.java =================================================================== --- trunk/exports/BiomasseFeconde.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/exports/BiomasseFeconde.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package exports; -import static org.nuiton.i18n.I18n._; - import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -74,7 +72,7 @@ @Override public String getDescription() { - return _("Exporte les biomasses fecondes, tableau avec des lignes pop;id;zone;date;nombre"); + return "Exporte les biomasses fecondes, tableau avec des lignes pop;id;zone;date;nombre"; } @Override Modified: trunk/exports/MortalitePecheGroupe.java =================================================================== --- trunk/exports/MortalitePecheGroupe.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/exports/MortalitePecheGroupe.java 2014-06-16 10:04:32 UTC (rev 39) @@ -26,7 +26,6 @@ import java.io.Writer; -import static org.nuiton.i18n.I18n._; import org.nuiton.math.matrix.*; import scripts.ResultName; @@ -73,7 +72,7 @@ @Override public String getDescription() { - return _("Exporte la mortalite par peche par groupe et par population de la simulation (Fgroup par an calcule en decembre)"); + return "Exporte la mortalite par peche par groupe et par population de la simulation (Fgroup par an calcule en decembre)"; } @Override Modified: trunk/exports/MortalitePecheTotale.java =================================================================== --- trunk/exports/MortalitePecheTotale.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/exports/MortalitePecheTotale.java 2014-06-16 10:04:32 UTC (rev 39) @@ -26,7 +26,6 @@ import java.io.Writer; -import static org.nuiton.i18n.I18n._; import org.nuiton.math.matrix.*; import scripts.ResultName; @@ -73,7 +72,7 @@ @Override public String getDescription() { - return _("Exporte la mortalite par peche totale de la simulation par population (Fpop par an calcule en decembre)"); + return "Exporte la mortalite par peche totale de la simulation par population (Fpop par an calcule en decembre)"; } @Override Modified: trunk/rules/GraviteVPUE1_Ponderation.java =================================================================== --- trunk/rules/GraviteVPUE1_Ponderation.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/GraviteVPUE1_Ponderation.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -95,7 +93,7 @@ */ @Override public String getDescription() throws Exception { - return _("Calcule les proportion par metier chaque mois en fonction de la VPUE du metier l'annee precedante"); + return "Calcule les proportion par metier chaque mois en fonction de la VPUE du metier l'annee precedante"; /*"HYPOTHESES GRAVITE" " attention cette rÃƒÂ¨gle doit toujours ÃƒÂªtre mise avant les mesures de gestion"+ " si pour un metier Effort(metier annee-1,mois) = 0 et propinitiale (metier, mois) !=0 (ie metier potentiellement pratique), alors "+ Modified: trunk/rules/HCR_transition_MSY.java =================================================================== --- trunk/rules/HCR_transition_MSY.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/HCR_transition_MSY.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,11 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - -import java.util.HashSet; -import java.util.Set; - import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.nuiton.math.matrix.MatrixIterator; @@ -35,18 +30,10 @@ import scripts.RuleUtil; import scripts.SiMatrix; import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.entities.EffortDescription; import fr.ifremer.isisfish.entities.Metier; import fr.ifremer.isisfish.entities.Population; import fr.ifremer.isisfish.entities.PopulationGroup; -import fr.ifremer.isisfish.entities.Species; -import fr.ifremer.isisfish.entities.Strategy; -import fr.ifremer.isisfish.entities.StrategyMonthInfo; -import fr.ifremer.isisfish.entities.TargetSpecies; -import fr.ifremer.isisfish.entities.Zone; // ??????? import fr.ifremer.isisfish.rule.AbstractRule; -import fr.ifremer.isisfish.simulator.MetierMonitor; -import fr.ifremer.isisfish.simulator.PopulationMonitor; import fr.ifremer.isisfish.simulator.SimulationContext; import fr.ifremer.isisfish.types.TimeStep; import fr.ifremer.isisfish.types.Month; @@ -124,7 +111,7 @@ */ @Override public String getDescription() { - return _("Harvest Control Rule simulatinf the transition between a precautionary approach management and a MSY management, for a given populaion"); + return "Harvest Control Rule simulatinf the transition between a precautionary approach management and a MSY management, for a given populaion"; } /** Modified: trunk/rules/Ogive_de_Tri_Merlu.java =================================================================== --- trunk/rules/Ogive_de_Tri_Merlu.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/Ogive_de_Tri_Merlu.java 2014-06-16 10:04:32 UTC (rev 39) @@ -1,7 +1,5 @@ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.List; import java.util.ArrayList; import java.util.Iterator; @@ -89,7 +87,7 @@ */ @Override public String getDescription() throws Exception { - return _("rejet des captures de merlu selon une sigmoide avec prop de survie selon Metier - pecherie Merlu-Langoustine GdG"); + return "rejet des captures de merlu selon une sigmoide avec prop de survie selon Metier - pecherie Merlu-Langoustine GdG"; } /** Modified: trunk/rules/TACpoids20012011.java =================================================================== --- trunk/rules/TACpoids20012011.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/TACpoids20012011.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.HashSet; import java.util.Set; @@ -129,7 +127,7 @@ */ @Override public String getDescription() { - return _("TAC weight in tons.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."); + return "TAC weight in tons.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."; } /** Modified: trunk/rules/TACpoids20012011OgiveTriMerlu.java =================================================================== --- trunk/rules/TACpoids20012011OgiveTriMerlu.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/TACpoids20012011OgiveTriMerlu.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.HashSet; import java.util.Set; import java.util.List; @@ -142,7 +140,7 @@ */ @Override public String getDescription() { - return _("Combinaison de la regle tac poids sur 2001-2011 avec ogive de tri + prop de survie des rejets."); + return "Combinaison de la regle tac poids sur 2001-2011 avec ogive de tri + prop de survie des rejets."; } /** Modified: trunk/rules/TACpoids20012011TailleMin.java =================================================================== --- trunk/rules/TACpoids20012011TailleMin.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/TACpoids20012011TailleMin.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.HashSet; import java.util.Set; import java.util.List; @@ -141,7 +139,7 @@ */ @Override public String getDescription() { - return _("Combinaison de la regle tac poids sur 2001-2011 avec tailleMin + prop de survie des rejets."); + return "Combinaison de la regle tac poids sur 2001-2011 avec tailleMin + prop de survie des rejets."; } /** Modified: trunk/rules/TACpoidsPop.java =================================================================== --- trunk/rules/TACpoidsPop.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/TACpoidsPop.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.HashSet; import java.util.Set; @@ -113,7 +111,7 @@ */ @Override public String getDescription() { - return _("TAC weight in tons per population.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."); + return "TAC weight in tons per population.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."; } /** Modified: trunk/rules/TACpoidsPop20082011.java =================================================================== --- trunk/rules/TACpoidsPop20082011.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/TACpoidsPop20082011.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.HashSet; import java.util.Set; @@ -112,7 +110,7 @@ */ @Override public String getDescription() { - return _("TAC weight in tons.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."); + return "TAC weight in tons.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."; } /** Modified: trunk/rules/TACpoidsPop_PourHCR.java =================================================================== --- trunk/rules/TACpoidsPop_PourHCR.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/TACpoidsPop_PourHCR.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.HashSet; import java.util.Set; @@ -107,7 +105,7 @@ */ @Override public String getDescription() { - return _("TAC weight in tons per population.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."); + return "TAC weight in tons per population.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."; } /** Modified: trunk/rules/TACpoidsTailleMin.java =================================================================== --- trunk/rules/TACpoidsTailleMin.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/rules/TACpoidsTailleMin.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package rules; -import static org.nuiton.i18n.I18n._; - import java.util.HashSet; import java.util.Set; import java.util.List; @@ -122,7 +120,7 @@ */ @Override public String getDescription() { - return _("TAC weight in tons.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."); + return "TAC weight in tons.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."; } /** @@ -140,7 +138,7 @@ * * @param context la simulation pour lequel on utilise cette regle * @param step le pas de temps courant - * @param metier le metier concernÃƒÆ’Ã‚Â© + * @param metier le metier concerne * @return vrai si on souhaite que les actions soit faites */ @Override @@ -154,7 +152,7 @@ TargetSpecies ts = metier.getMetierSeasonInfo(step.getMonth()) .getSpeciesTargetSpecies(param_species); boolean result = false; - if (ts != null) { // on n'applique la regle que si espece capturÃƒÆ’Ã†â€™Ãƒâ€ Ã¢â‚¬â„¢ÃƒÆ’Ã¢â‚¬Å¡Ãƒâ€šÃ‚Â©e par ce metier + if (ts != null) { // on n'applique la regle que si espece capturee par ce metier // on fait le calcul du tac si necessaire if (param_propTac > 0 && step.getMonth().equals(Month.JANUARY)) { PopulationMonitor popMon = context.getPopulationMonitor(); @@ -317,7 +315,7 @@ // la matrice de captures a une dimension metier - donc a cette etape, toutes // les captures de tous les metiers sont connues // Ne doit pas s'appliquer pour chaque metier de la boucle mais une seule fois! - // affectation est mis ÃƒÆ’Ã†â€™Ãƒâ€ Ã¢â‚¬â„¢ÃƒÆ’Ã¢â‚¬Å¡Ãƒâ€šÃ‚Â true ÃƒÆ’Ã†â€™Ãƒâ€ Ã¢â‚¬â„¢ÃƒÆ’Ã¢â‚¬Å¡Ãƒâ€šÃ‚Â la fin de la boucle sur les pop + // affectation est mis a true a la fin de la boucle sur les pop // la preaction ne tourne que si le TAC est atteint if (tacAtteint) { //postAction de la regle TAC dans ce cas TailleMin ne s'applique pas Modified: trunk/sensitivityexports/SensitivityBiomassJanvierY3.java =================================================================== --- trunk/sensitivityexports/SensitivityBiomassJanvierY3.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/sensitivityexports/SensitivityBiomassJanvierY3.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package sensitivityexports; -import static org.nuiton.i18n.I18n._; - import java.io.Writer; import org.apache.commons.logging.Log; @@ -68,7 +66,7 @@ @Override public String getDescription() { - return _("Biomass for January of the last year. Biomass is the sum on the groups and zones"); + return "Biomass for January of the last year. Biomass is the sum on the groups and zones"; } @Override Modified: trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java =================================================================== --- trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java 2014-06-16 10:04:32 UTC (rev 39) @@ -21,8 +21,6 @@ */ package sensitivityexports; -import static org.nuiton.i18n.I18n._; - import java.io.Writer; import org.apache.commons.logging.Log; @@ -78,7 +76,7 @@ @Override public String getDescription() { - return _("Biomass January last year / Biomass January first year. Biomass is the sum on the groups and zones"); + return "Biomass January last year / Biomass January first year. Biomass is the sum on the groups and zones"; } @Override Modified: trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java =================================================================== --- trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java 2014-06-16 10:04:32 UTC (rev 39) @@ -37,8 +37,6 @@ import java.io.Writer; -import static org.nuiton.i18n.I18n._; - public class SensitivitySpawningBiomassJanvierY2 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ @@ -80,7 +78,7 @@ @Override public String getDescription() { - return _("Biomass of genitors for January of the last year. Biomass is the sum on the groups and zones"); + return "Biomass of genitors for January of the last year. Biomass is the sum on the groups and zones"; } @Override Modified: trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java =================================================================== --- trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java 2014-06-16 10:04:32 UTC (rev 39) @@ -37,8 +37,6 @@ import java.io.Writer; -import static org.nuiton.i18n.I18n._; - public class SensitivitySpawningBiomassRelativeJanvierY5 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ @@ -95,7 +93,7 @@ @Override public String getDescription() { - return _("Biomass of genitors January last year / Biomass of genitors January first year . Biomass is the sum on the groups and zones"); + return "Biomass of genitors January last year / Biomass of genitors January first year . Biomass is the sum on the groups and zones"; } @Override Modified: trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java =================================================================== --- trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java 2014-06-16 10:04:32 UTC (rev 39) @@ -26,8 +26,6 @@ import java.io.Writer; -import static org.nuiton.i18n.I18n._; - import org.nuiton.math.matrix.*; import scripts.ResultName; @@ -77,7 +75,7 @@ @Override public String getDescription() { - return _("Total fishing mortality for the last year for the population. Total fishing mortality is the mean on zones, representative groups, and the sum of metiers and strategies"); + return "Total fishing mortality for the last year for the population. Total fishing mortality is the mean on zones, representative groups, and the sum of metiers and strategies"; } @Override Modified: trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java =================================================================== --- trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java 2013-05-02 16:57:26 UTC (rev 38) +++ trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java 2014-06-16 10:04:32 UTC (rev 39) @@ -26,8 +26,6 @@ import java.io.Writer; -import static org.nuiton.i18n.I18n._; - import org.nuiton.math.matrix.*; import scripts.ResultName; @@ -84,7 +82,7 @@ @Override public String getDescription() { - return _("Total fishing mortality for the last year for the population. Total fishing mortality is the mean on zones, representative groups, and the sum of metiers and strategies"); + return "Total fishing mortality for the last year for the population. Total fishing mortality is the mean on zones, representative groups, and the sum of metiers and strategies"; } @Override

1 0

r38 - trunk/sensitivityexports
by loic＠users.forge.codelutin.com May 2, 2013

May 2, 2013

Author: loic Date: 2013-05-02 18:57:26 +0200 (Thu, 02 May 2013) New Revision: 38 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: sensitivityexport_total_fishing_mortality_relative Added: trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java Added: trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java =================================================================== --- trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java (rev 0) +++ trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java 2013-05-02 16:57:26 UTC (rev 38) @@ -0,0 +1,105 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package sensitivityexports; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; + +import java.io.Writer; + +import static org.nuiton.i18n.I18n._; + +import org.nuiton.math.matrix.*; + +import scripts.ResultName; + +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; + +import fr.ifremer.isisfish.entities.*; + +import fr.ifremer.isisfish.export.SensitivityExport; + +import fr.ifremer.isisfish.types.TimeStep; + +import fr.ifremer.isisfish.util.Doc; + +public class SensitivityTotalFishingMortalityY2 implements SensitivityExport { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory + .getLog(SensitivityTotalFishingMortalityY2.class); + + protected String[] necessaryResult = { ResultName.MATRIX_TOTAL_FISHING_MORTALITY }; + + @Doc("Population") + public Population param_pop; + + @Override + public void export(SimulationStorage simulation, Writer out) + throws Exception { + ResultStorage resultStorage = simulation.getResultStorage(); + TimeStep lastStep = resultStorage.getLastStep(); + TimeStep firstStep = new TimeStep(11); + double firsttotalFishingMortality = 0.0; + double totalFishingMortality = 0.0; + + for (Population pop : simulation.getParameter().getPopulations()) { + if (pop.getName().equals(param_pop.getName())) { + + //Get the fishing mortality on december of the first year + MatrixND matfirstdate = resultStorage.getMatrix(firstStep, pop, + ResultName.MATRIX_TOTAL_FISHING_MORTALITY); + firsttotalFishingMortality = matfirstdate.sumAll(); + + //Get the fishing mortality of the (last step of) the last year. + MatrixND matlastdate = resultStorage.getMatrix(lastStep, pop, + ResultName.MATRIX_TOTAL_FISHING_MORTALITY); + totalFishingMortality = matlastdate.sumAll(); + + } + } + + out.write(Double.toString(totalFishingMortality / firsttotalFishingMortality)); + } + + @Override + public String getDescription() { + return _("Total fishing mortality for the last year for the population. Total fishing mortality is the mean on zones, representative groups, and the sum of metiers and strategies"); + } + + @Override + public String getExportFilename() { + return "SensitivityTotalFishingMortalityY2_" + param_pop.getName(); + } + + @Override + public String getExtensionFilename() { + return ".csv"; + } + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + +}

1 0

r37 - trunk/sensitivityexports
by loic＠users.forge.codelutin.com May 2, 2013

May 2, 2013

Author: loic Date: 2013-05-02 18:57:10 +0200 (Thu, 02 May 2013) New Revision: 37 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: sensitivityexport_total_fishing_mortality Added: trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java Added: trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java =================================================================== --- trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java (rev 0) +++ trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java 2013-05-02 16:57:10 UTC (rev 37) @@ -0,0 +1,98 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package sensitivityexports; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; + +import java.io.Writer; + +import static org.nuiton.i18n.I18n._; + +import org.nuiton.math.matrix.*; + +import scripts.ResultName; + +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; + +import fr.ifremer.isisfish.entities.*; + +import fr.ifremer.isisfish.export.SensitivityExport; + +import fr.ifremer.isisfish.types.TimeStep; + +import fr.ifremer.isisfish.util.Doc; + +public class SensitivityTotalFishingMortalityY1 implements SensitivityExport { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory + .getLog(SensitivityTotalFishingMortalityY1.class); + + protected String[] necessaryResult = { ResultName.MATRIX_TOTAL_FISHING_MORTALITY }; + + @Doc("Population") + public Population param_pop; + + @Override + public void export(SimulationStorage simulation, Writer out) + throws Exception { + ResultStorage resultStorage = simulation.getResultStorage(); + TimeStep lastStep = resultStorage.getLastStep(); + double totalFishingMortality = 0.0; + + for (Population pop : simulation.getParameter().getPopulations()) { + if (pop.getName().equals(param_pop.getName())) { + + //Get the fishing mortality of the (last step of) the last year. + MatrixND matlastdate = resultStorage.getMatrix(lastStep, pop, + ResultName.MATRIX_TOTAL_FISHING_MORTALITY); + totalFishingMortality = matlastdate.sumAll(); + + } + } + + out.write(Double.toString(totalFishingMortality)); + } + + @Override + public String getDescription() { + return _("Total fishing mortality for the last year for the population. Total fishing mortality is the mean on zones, representative groups, and the sum of metiers and strategies"); + } + + @Override + public String getExportFilename() { + return "SensitivityTotalFishingMortalityY1_" + param_pop.getName(); + } + + @Override + public String getExtensionFilename() { + return ".csv"; + } + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + +}

1 0

r36 - trunk/sensitivityexports
by loic＠users.forge.codelutin.com May 2, 2013

May 2, 2013

Author: loic Date: 2013-05-02 18:56:41 +0200 (Thu, 02 May 2013) New Revision: 36 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: sensitivityexport_spawning_biomass_relative_janvier Added: trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java Added: trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java =================================================================== --- trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java (rev 0) +++ trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java 2013-05-02 16:56:41 UTC (rev 36) @@ -0,0 +1,116 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2009 - 2012 Ifremer, Code Lutin, Jean Couteau, Chatellier Eric + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package sensitivityexports; + +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.entities.PopulationGroup; +import fr.ifremer.isisfish.export.SensitivityExport; +import fr.ifremer.isisfish.types.TimeStep; +import fr.ifremer.isisfish.util.Doc; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixIterator; +import org.nuiton.math.matrix.MatrixND; + +import scripts.ResultName; + +import java.io.Writer; + +import static org.nuiton.i18n.I18n._; + +public class SensitivitySpawningBiomassRelativeJanvierY5 implements SensitivityExport { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory + .getLog(SensitivitySpawningBiomassRelativeJanvierY5.class); + + protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + + @Doc("Population") + public Population param_pop; + + @Override + public void export(SimulationStorage simulation, Writer out) + throws Exception { + TimeStep lastStep = simulation.getResultStorage().getLastStep(); + TimeStep janvierLastYear = new TimeStep(12 * lastStep.getYear()); + TimeStep firstStep = new TimeStep(0); + double biomass = 0.0; + double firstbiomass = 0.0; + + for (Population pop : simulation.getParameter().getPopulations()) { + if (pop.getName().equals(param_pop.getName())) { + ResultStorage resultStorage = simulation.getResultStorage(); + + //Get the biomass of the first time step + MatrixND matfirstdate = resultStorage.getMatrix(pop, + ResultName.MATRIX_BIOMASS); + for (MatrixIterator i = matfirstdate.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + PopulationGroup group = (PopulationGroup) sems[1]; + TimeStep step = (TimeStep) sems[0]; + if (step.equals(firstStep)) { + firstbiomass += i.getValue() + * group.getMaturityOgive(); + } + } + + //Get the biomass of the last time step + MatrixND matlastJan = resultStorage.getMatrix(pop, + ResultName.MATRIX_BIOMASS); + for (MatrixIterator i = matlastJan.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + PopulationGroup group = (PopulationGroup) sems[1]; + TimeStep step = (TimeStep) sems[0]; + if (step.equals(janvierLastYear)) + biomass += i.getValue() * group.getMaturityOgive(); + } + } + } + out.write(Double.toString(biomass / firstbiomass)); + } + + @Override + public String getDescription() { + return _("Biomass of genitors January last year / Biomass of genitors January first year . Biomass is the sum on the groups and zones"); + } + + @Override + public String getExportFilename() { + return "SensitivityGenitorBiomassRelativeJanvierY5_" + param_pop.getName(); + } + + @Override + public String getExtensionFilename() { + return ".csv"; + } + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + +}

1 0

r35 - trunk/sensitivityexports
by loic＠users.forge.codelutin.com May 2, 2013

May 2, 2013

Author: loic Date: 2013-05-02 18:56:05 +0200 (Thu, 02 May 2013) New Revision: 35 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: sensitivityexport_spawning_biomass_janvier Added: trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java Added: trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java =================================================================== --- trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java (rev 0) +++ trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java 2013-05-02 16:56:05 UTC (rev 35) @@ -0,0 +1,101 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2009 - 2012 Ifremer, Code Lutin, Jean Couteau, Chatellier Eric + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package sensitivityexports; + +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.entities.PopulationGroup; +import fr.ifremer.isisfish.export.SensitivityExport; +import fr.ifremer.isisfish.types.TimeStep; +import fr.ifremer.isisfish.util.Doc; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixIterator; +import org.nuiton.math.matrix.MatrixND; + +import scripts.ResultName; + +import java.io.Writer; + +import static org.nuiton.i18n.I18n._; + +public class SensitivitySpawningBiomassJanvierY2 implements SensitivityExport { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory + .getLog(SensitivitySpawningBiomassJanvierY2.class); + + protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + + @Doc("Population") + public Population param_pop; + + @Override + public void export(SimulationStorage simulation, Writer out) + throws Exception { + TimeStep lastStep = simulation.getResultStorage().getLastStep(); + TimeStep janvierLastYear = new TimeStep(12 * lastStep.getYear()); + double biomass = 0.0; + + for (Population pop : simulation.getParameter().getPopulations()) { + if (pop.getName().equals(param_pop.getName())) { + ResultStorage resultStorage = simulation.getResultStorage(); + + //Get the biomass of the last time step + MatrixND matlastJan = resultStorage.getMatrix(pop, + ResultName.MATRIX_BIOMASS); + for (MatrixIterator i = matlastJan.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + TimeStep step = (TimeStep) sems[0]; + PopulationGroup group = (PopulationGroup) sems[1]; + if (step.equals(janvierLastYear)) { + biomass += i.getValue() * group.getMaturityOgive(); + } + } + } + } + out.write(Double.toString(biomass)); + } + + @Override + public String getDescription() { + return _("Biomass of genitors for January of the last year. Biomass is the sum on the groups and zones"); + } + + @Override + public String getExportFilename() { + return "SensitivityGenitorBiomassJanvierY2_" + param_pop.getName(); + } + + @Override + public String getExtensionFilename() { + return ".csv"; + } + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + +}

1 0

r34 - trunk/sensitivityexports
by loic＠users.forge.codelutin.com May 2, 2013

May 2, 2013

Author: loic Date: 2013-05-02 18:55:47 +0200 (Thu, 02 May 2013) New Revision: 34 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: sensitivityexport_biomass_relative_janvier Added: trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java Added: trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java =================================================================== --- trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java (rev 0) +++ trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java 2013-05-02 16:55:47 UTC (rev 34) @@ -0,0 +1,99 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package sensitivityexports; + +import static org.nuiton.i18n.I18n._; + +import java.io.Writer; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixND; + +import scripts.ResultName; +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.export.SensitivityExport; +import fr.ifremer.isisfish.types.TimeStep; +import fr.ifremer.isisfish.util.Doc; + +public class SensitivityBiomassRelativeJanvierY6 implements SensitivityExport { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory + .getLog(SensitivityBiomassRelativeJanvierY6.class); + + protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + + @Doc("Population") + public Population param_pop; + + @Override + public void export(SimulationStorage simulation, Writer out) + throws Exception { + ResultStorage resultStorage = simulation.getResultStorage(); + TimeStep lastStep = resultStorage.getLastStep(); + TimeStep janvierLastYear = new TimeStep(12 * lastStep.getYear()); + TimeStep firstStep = new TimeStep(0); + double biomass = 0.0; + double firstbiomass = 0.0; + + for (Population pop : simulation.getParameter().getPopulations()) { + if (pop.getName().equals(param_pop.getName())) { + + //Get the biomass on december of the first year + MatrixND matfirstdate = resultStorage.getMatrix(firstStep, pop, + ResultName.MATRIX_BIOMASS); + firstbiomass = matfirstdate.sumAll(); + + //Get the biomass on the month of January of the last time step + MatrixND matlastJan = resultStorage.getMatrix(janvierLastYear, pop, + ResultName.MATRIX_BIOMASS); + biomass = matlastJan.sumAll(); + + } + } + out.write(Double.toString(biomass / firstbiomass)); + } + + @Override + public String getDescription() { + return _("Biomass January last year / Biomass January first year. Biomass is the sum on the groups and zones"); + } + + @Override + public String getExportFilename() { + return "SensitivityBiomassRelativeJanvierY6_" + param_pop.getName(); + } + + @Override + public String getExtensionFilename() { + return ".csv"; + } + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + +}

1 0

r33 - trunk/sensitivityexports
by loic＠users.forge.codelutin.com May 2, 2013

May 2, 2013

Author: loic Date: 2013-05-02 18:55:25 +0200 (Thu, 02 May 2013) New Revision: 33 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: sensitivityexport_biomass_janvier Added: trunk/sensitivityexports/SensitivityBiomassJanvierY3.java Added: trunk/sensitivityexports/SensitivityBiomassJanvierY3.java =================================================================== --- trunk/sensitivityexports/SensitivityBiomassJanvierY3.java (rev 0) +++ trunk/sensitivityexports/SensitivityBiomassJanvierY3.java 2013-05-02 16:55:25 UTC (rev 33) @@ -0,0 +1,89 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package sensitivityexports; + +import static org.nuiton.i18n.I18n._; + +import java.io.Writer; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixND; + +import scripts.ResultName; +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.export.SensitivityExport; +import fr.ifremer.isisfish.types.TimeStep; +import fr.ifremer.isisfish.util.Doc; + +public class SensitivityBiomassJanvierY3 implements SensitivityExport { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory.getLog(SensitivityBiomassJanvierY3.class); + + protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + + @Doc("Population") + public Population param_pop; + + @Override + public void export(SimulationStorage simulation, Writer out) + throws Exception { + ResultStorage resultStorage = simulation.getResultStorage(); + TimeStep lastStep = resultStorage.getLastStep(); + TimeStep janvierLastYear = new TimeStep(12 * lastStep.getYear()); + double biomass = 0.0; + for (Population pop : simulation.getParameter().getPopulations()) { + if (pop.getName().equals(param_pop.getName())) { + + //Get the biomass of the last time step + MatrixND matlastJan = resultStorage.getMatrix(janvierLastYear, pop, + ResultName.MATRIX_BIOMASS); + biomass = matlastJan.sumAll(); + } + } + out.write(Double.toString(biomass)); + } + + @Override + public String getDescription() { + return _("Biomass for January of the last year. Biomass is the sum on the groups and zones"); + } + + @Override + public String getExportFilename() { + return "SensitivityBiomassJanvierY3_" + param_pop.getName(); + } + + @Override + public String getExtensionFilename() { + return ".csv"; + } + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + +}

1 0

r32 - trunk/rules
by loic＠users.forge.codelutin.com May 2, 2013

May 2, 2013

Author: loic Date: 2013-05-02 18:54:39 +0200 (Thu, 02 May 2013) New Revision: 32 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revision… Log: TAC_poids_pop_HCR Added: trunk/rules/TACpoidsPop_PourHCR.java Added: trunk/rules/TACpoidsPop_PourHCR.java =================================================================== --- trunk/rules/TACpoidsPop_PourHCR.java (rev 0) +++ trunk/rules/TACpoidsPop_PourHCR.java 2013-05-02 16:54:39 UTC (rev 32) @@ -0,0 +1,374 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package rules; + +import static org.nuiton.i18n.I18n._; + +import java.util.HashSet; +import java.util.Set; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixIterator; +import org.nuiton.math.matrix.MatrixND; + +import scripts.ResultName; +import scripts.RuleUtil; +import scripts.SiMatrix; +import rules.HCR_transition_MSY; // En a-t-on besoin ???? +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.entities.EffortDescription; +import fr.ifremer.isisfish.entities.Metier; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.entities.Species; +import fr.ifremer.isisfish.entities.Strategy; +import fr.ifremer.isisfish.entities.StrategyMonthInfo; +import fr.ifremer.isisfish.entities.TargetSpecies; +import fr.ifremer.isisfish.rule.AbstractRule; +import fr.ifremer.isisfish.simulator.MetierMonitor; +import fr.ifremer.isisfish.simulator.PopulationMonitor; +import fr.ifremer.isisfish.simulator.SimulationContext; +import fr.ifremer.isisfish.types.TimeStep; +import fr.ifremer.isisfish.types.Month; +import fr.ifremer.isisfish.util.Doc; + +/** + * TAC peut-etre utilise pour les differents TAC, en proportion des effectifs + * et/ou avec survie ou non. + * + * <li>Pour utiliser le tac proportionnel, il faut mettre dans le parametre + * propTac une valeur > 0, le TAC sera alors recalcule a chaque mois de janvier. + * <li>Pour utiliser la survie il faut mettre dans le parametre propSurvie une + * valeur > 0, automatiquement les suvie seront ajoute aux effectifs + * + * Created: + * + * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @version $Revision: 1.3 $ + * + * Last update: $Date: 010812 $ + * by : $Author: Loic $ + */ +public class TACpoidsPop_PourHCR extends AbstractRule { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory.getLog( TACpoidsPop_PourHCR.class); + + /** Population */ + public Population param_population = null; + /** TAC in tonnes */ + public double tacInTons = 0; + /** First step at which this particular TAC is applied */ + public TimeStep beginStep = new TimeStep(36); + public TimeStep endStep = new TimeStep(119); + /** Proportion of fish that survives when discarded */ + public double propSurvie = 0; + + boolean affectation = false; + + protected String[] necessaryResult = { + // put here all necessary result for this rule + // example: + // ResultName.MATRIX_BIOMASS, + // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + }; + + /** + * @return the necessaryResult + */ + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + + /** + * Permet d'afficher a l'utilisateur une aide sur la regle. + * + * @return L'aide ou la description de la regle + */ + @Override + public String getDescription() { + return _("TAC weight in tons per population.\nIf you want survival discard use propSurvie other than 0.\nIf you wish TAC computed as a proportion of the biomass use propTac other than 0."); + } + + /** + * Appele au demarrage de la simulation, cette methode permet d'initialiser + * des valeurs + * + * @param context La simulation pour lequel on utilise cette regle + */ + @Override + public void init(SimulationContext context) throws Exception { + } + + /** + * La condition qui doit etre vrai pour faire les actions. + * + * @param context la simulation pour lequel on utilise cette regle + * @param step le pas de temps courant + * @param metier le metier concerne + * @return vrai si on souhaite que les actions soit faites + */ + @Override + public boolean condition(SimulationContext context, TimeStep step, Metier metier) + throws Exception { + + /** Population */ + //population = (Population) context.getValue("Population_TAC_HCR"); // pb avec l'utilisation des getValue + /** TAC in tonnes */ + tacInTons = (Double) context.getValue("TAC_" + param_population.getName() + "_HCR"); + /** First step at which this particular TAC is applied */ + beginStep = (TimeStep) context.getValue("BeginStep_TAC_" + param_population.getName() + "_HCR"); + endStep = beginStep.nextYear(); // One TAC a year + log.info("beginStep = " + beginStep); + log.info("endStep = " + endStep); + /** Proportion of fish that survives when discarded */ + propSurvie = (Double) context.getValue("PropSurvie_TAC_" + param_population.getName() + "_HCR"); + + + log.info("test si TAC atteint"); + + param_population = (Population) context.getDB().findByTopiaId( + param_population.getTopiaId()); + + + boolean result = false; + if (step.before(beginStep)) { + result = false; + } else if (step.after(endStep)) { + result = false; + } else { + TargetSpecies ts = metier.getMetierSeasonInfo(step.getMonth()) + .getSpeciesTargetSpecies(param_population.getSpecies()); + if (ts != null) { + double catchTons = RuleUtil.getTotalCatchTonsPop(context, + param_population, step); + + //PopulationMonitor popMon = context.getPopulationMonitor(); + //double catchTons = popMon.getTotalHoldCatch(param_population); // Rend une matrice (dimensions ??) utiliser getTotalHoldCatch(Population pop) (qui rend un double) a la place ?? + + log.info("[TAC] catchTons = " + catchTons + + " >= tacInTons:" + tacInTons); + if (catchTons >= tacInTons) { + result = true; + } + } + } + return result; + } + + /** + * Si la condition est vrai alors cette action est executee avant le pas + * de temps de la simulation. + * + * @param context la simulation pour lequel on utilise cette regle + * @param step le pas de temps courant + * @param metier le metier concerne + */ + @Override + public void preAction(SimulationContext context, TimeStep step, Metier metier) + throws Exception { + + log.info("Using TACpoidsPop_PourHCR"); + + affectation = false; + + log.info("[TAC] preAction for: " + metier); + log.info(" TAC atteint [TAC] preAction for: " + metier); + TargetSpecies ts = metier.getMetierSeasonInfo(step.getMonth()) + .getSpeciesTargetSpecies(param_population.getSpecies()); + if (ts != null && ts.getPrimaryCatch()) { + // recupere tous les metiers qui ont l'espece en capture principale =>metiers vises + // aimedMetiers ne fonctionne pas je ne sais pas pourquoi ! mais au final forbiddenMetier aura le meme effet + + context.getMetierMonitor().addforbiddenMetier(metier); + + //recupere toutes les strategies pratiquant le metier et pour lesquelles la proportion !=0 + SiMatrix siMatrix = SiMatrix.getSiMatrix(context); + Set<Strategy> strs = new HashSet<Strategy>(); + for (Strategy str : siMatrix.getStrategies(step)) { + double prop = str.getStrategyMonthInfo(step.getMonth()) + .getProportionMetier(metier); + if (prop != 0) { + strs.add(str); + } + } + + for (Strategy str : strs) { + StrategyMonthInfo smi = str.getStrategyMonthInfo(step + .getMonth()); + + // 1er cas de figure: l'effort est reporte sur un metier de la + // meme strategie, n'ayant pas l'espece comme capture principale + // et pechant avec le meme engin + Set<Metier> possibleMetierCase1 = new HashSet<Metier>(); + // second cas de figure: on cherche un metier de substitution + // sans condition sur les engins, mais qui soit pratique + Set<Metier> possibleMetierCase2 = new HashSet<Metier>(); + // 3 eme cas de figure: on cherche des metiers non vises, + // sans consideration sur les engins, et pour lesquels la + // proportion peut etre nulle + Set<Metier> possibleMetierCase3 = new HashSet<Metier>(); + + for (EffortDescription effort : str.getSetOfVessels() + .getPossibleMetiers()) { + Metier newMetier = effort.getPossibleMetiers(); + if ( + /*!aimedMetiers.contains(newMetier) + &&*/!metier.getName().equalsIgnoreCase("nonActiviy") + && !metier.getName().equalsIgnoreCase("nonActivie") + && !metier.getName().equalsIgnoreCase( + "non Activite") + && !context.getMetierMonitor().getForbiddenMetier() + .contains(newMetier)) { + possibleMetierCase3.add(newMetier); + + if (smi.getProportionMetier(newMetier) != 0) { + possibleMetierCase2.add(newMetier); + + if (metier.getGear().equals(newMetier.getGear())) { + possibleMetierCase1.add(newMetier); + } + } + } + } + + Set<Metier> possibleMetier = null; + if (possibleMetierCase1.size() != 0) { + log.info("[TAC] Use case 1"); + possibleMetier = possibleMetierCase1; + } else if (possibleMetierCase2.size() != 0) { + log.info("[TAC] Use case 2"); + possibleMetier = possibleMetierCase2; + } else if (possibleMetierCase3.size() != 0) { + log.info("[TAC] Use case 3"); + possibleMetier = possibleMetierCase3; + } + + if (possibleMetier != null) { + // on repartit maintenant l'effort entre les differents metiers + // possibles dans la meme strategie si un metier possible existe + // bien la repartion est proportionnelle a l'effort deja alloue + // dans la strategie + + double somme = 0; + for (Metier met : possibleMetier) { + somme += smi.getProportionMetier(met); + } + for (Metier met : possibleMetier) { + double newProportion = smi.getProportionMetier(met) + + (smi.getProportionMetier(metier) + * smi.getProportionMetier(met) / somme); + smi.setProportionMetier(met, newProportion); + } + smi.setProportionMetier(metier, 0); //le metier vise a alors une proportion nulle + log.info("[TAC] il y a des metiers possibles"); + } else { + log.info("[TAC] Use no activity"); + + // sinon on met tout dans le metier nonActivite + MetierMonitor metierMon = context.getMetierMonitor(); + MatrixND mat = metierMon.getOrCreateNoActivity(step, + ResultName.MATRIX_NO_ACTIVITY, siMatrix + .getStrategies(step), siMatrix + .getMetiers(step)); + mat.setValue(str, metier, smi.getProportionMetier(metier)); + + smi.getProportionMetier().setValue(metier, 0); + } + } + } + } + + /** + // * Si la condition est vrai alors cette action est executee apres le pas + * de temps de la simulation. + * + * @param context La simulation pour lequel on utilise cette regle + * @param step le pas de temps courant + * @param metier le metier concerne + */ + @Override + public void postAction(SimulationContext context, TimeStep step, Metier metier) + throws Exception { + ResultStorage resultmanager = context.getSimulationStorage() + .getResultStorage(); + log.info("[TAC] postAction for: " + metier); + TargetSpecies ts = metier.getMetierSeasonInfo(step.getMonth()) + .getSpeciesTargetSpecies(param_population.getSpecies()); + if (ts != null) { + if (!affectation) { + // ATTENTION + // les captures pour cette metapop ne sont plus du qu'au metier + // pour qui l'espece est secondaire: elles sont affectees aux + // rejets + + //pb : ne se fait pas par metier + // il faut une matrice pour chaques pas de temps qui stocke les + // rejets par metier, par metapop et par classes d'age (comme + // pour les captures) + ////// + PopulationMonitor popMon = context.getPopulationMonitor(); + log.info("popMon biomass" + popMon.getBiomass(param_population)); // A priori on travaille ici sur une pop donnee car on defini le TAC sur une seule pop... Donc pas la peine de boucler sur les populations. + + if (!param_population.getName().equals("Population_new")) { + log.info("param_population : " + param_population.getName()); + // si on a deja une matrice rejet on le vide (elle vient + // forcement de la regle taille minimale or si le tac est + // atteint, tout va dorenavent dans les rejets et on mais + // TOUTES les captures dans les rejets + MatrixND discard = popMon.getDiscard(step, param_population); + log.info("discard : " + discard); + if (discard != null) { + discard.mults(0); + } + log.info("catch = " + popMon.getCatch(param_population)); + discard = popMon.getCatch(param_population).copy(); + // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop + discard.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + popMon.addDiscard(step, param_population, discard); + log.info("[TAC] add discard for " + param_population + ": " + + discard); + // ne manquerait-il pas + resultmanager.addResult(step, param_population, discard); + if (propSurvie > 0) { + MatrixND eff = popMon.getN(param_population); + //on rajoute les survivants aux effectifs + for (MatrixIterator i = discard.iterator(); i + .next();) { + Object[] coord = i.getSemanticsCoordinates(); + eff.setValue(coord[2], coord[3], eff.getValue( + coord[2], coord[3]) + + i.getValue() * propSurvie); + } + } + + } + + // on a affecte une fois cette meta pop au rejet il ne faut pas + // le refaire + affectation = true; + } + } + } + +}

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