March 2018 - Echobase-commits - mailman.cloud.codelutin.com

branch develop updated (9c5df671 -> 52a37f0c)
by codelutin.com scm 20 Mar '18

20 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 9c5df671 [jgitflow-maven-plugin]updating poms for 4.0.15-SNAPSHOT development new 07383576 [jgitflow-maven-plugin]updating develop poms to master versions to avoid merge conflicts new f2878178 [jgitflow-maven-plugin]updating poms for branch'release/4.0.14' with non-snapshot versions new 90365d28 [jgitflow-maven-plugin]merging 'release/4.0.14' into 'master' new 8d335e3c [jgitflow-maven-plugin]merging 'master' into 'develop' new 52a37f0c [jgitflow-maven-plugin]Updating develop poms back to pre merge state The 5 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 52a37f0ce06263b2c2ec4bdd894000d6b4040544 Author: Maven Release <maven-release(a)codelutin.com> Date: Tue Mar 20 11:24:30 2018 +0100 [jgitflow-maven-plugin]Updating develop poms back to pre merge state commit 8d335e3c2169954e8a0abc46237c64f7d9a2f23e Merge: 07383576 90365d28 Author: Maven Release <maven-release(a)codelutin.com> Date: Tue Mar 20 11:24:15 2018 +0100 [jgitflow-maven-plugin]merging 'master' into 'develop' commit 073835765c5bdfcacb5b667e1bfe1d2d326947b0 Author: Maven Release <maven-release(a)codelutin.com> Date: Tue Mar 20 11:24:13 2018 +0100 [jgitflow-maven-plugin]updating develop poms to master versions to avoid merge conflicts commit 90365d28b6cb705572ce74d34a7062d943276006 Merge: be377dde f2878178 Author: Maven Release <maven-release(a)codelutin.com> Date: Tue Mar 20 11:23:59 2018 +0100 [jgitflow-maven-plugin]merging 'release/4.0.14' into 'master' commit f28781781fe8fac9586b9d761e778fecedef696b Author: Maven Release <maven-release(a)codelutin.com> Date: Tue Mar 20 11:19:53 2018 +0100 [jgitflow-maven-plugin]updating poms for branch'release/4.0.14' with non-snapshot versions Summary of changes: -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 5

branch master updated (be377dde -> 90365d28)
by codelutin.com scm 20 Mar '18

20 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch master in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from be377dde [jgitflow-maven-plugin]merging 'release/4.0.13' into 'master' adds 16bbbae4 [jgitflow-maven-plugin]updating poms for 4.0.14-SNAPSHOT development adds ecfafdda [jgitflow-maven-plugin]updating develop poms to master versions to avoid merge conflicts adds 66b830e8 [jgitflow-maven-plugin]merging 'master' into 'develop' adds ccb6a0b2 [jgitflow-maven-plugin]Updating develop poms back to pre merge state adds b4ecf781 Fix subsamples import adds 68d3b25b refs #9685 : fixes biotic ICES export fixes #9735 fixes #9734 fixes #9714 adds 3653682f fixes #9736: Il n'y a que des données associées au SaCategory "D4" dans l'export acoustic adds 24614be9 Update postgres version to avoid missing am.amcanorder column bug on postgres server >=9.6 adds 4cc27889 fixes #9687 : La suppression d'un voyage/transit/transect ne fonctionne pas. adds 016cd029 fixes #9774 : Décalage dans ESDUs auxquels sont attribués les résultats NASC par echotypes en base et dans l'export xml acoustic adds 1083a949 fixes #9778 : Les latitudes et longitudes des logs du fichier acoustic sont égales à zéro adds 1dd70771 fixes #9685 : Les fichiers xml biotic et acoustic de thalassa PELGAS2015 ne s'importent plus dans le portail ICES adds f2878178 [jgitflow-maven-plugin]updating poms for branch'release/4.0.14' with non-snapshot versions adds 90365d28 [jgitflow-maven-plugin]merging 'release/4.0.14' into 'master' No new revisions were added by this update. Summary of changes: echobase-domain/pom.xml | 2 +- echobase-services/pom.xml | 2 +- .../service/atlantos/xml/XmlAccousticExport.java | 20 ++++--- .../service/atlantos/xml/XmlBioticExport.java | 64 +++++++++++++++++----- .../VoyageCatchesSubSampleImportAction.java | 2 +- .../strategy/CommonAllRemoveDataStrategy.java | 37 +++++++++++++ echobase-ui/pom.xml | 2 +- pom.xml | 4 +- 8 files changed, 106 insertions(+), 27 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

[ANN] - EchoBase 4.0.14 released
by codelutin.com Release Notification 20 Mar '18

20 Mar '18

The EchoBase team is pleased to announce the echobase-4.0.14 release! The French Institute for the Exploitation of the Sea (Ifremer) has designed an open software suite for storing fisheries acoustic data and computing acoustic indicators for survey-based ecosystem monitoring. It comprises a postgreSQL database designed to store acoustic, navigation and fishing data from ecosystemic surveys (EchoBase) and a suite of R codes (EchoR) for computing fish population indicators based on Echobase data. Documentation of the project can be found here: http://echobase.codelutin.com Changes ------- Changes in this version include: Fixed Bugs: o Les fichiers xml biotic et acoustic de thalassa PELGAS2015 ne s'importent plus dans le portail ICES Issue: 9685. Thanks to Mathieu Doray. Resolved by jcouteau. o Les latitudes et longitudes des logs du fichier acoustic sont égales à zéro Issue: 9778. Thanks to Mathieu Doray. Resolved by jcouteau. o Décalage dans ESDUs auxquels sont attribués les résultats NASC par echotypes en base et dans l'export xml acoustic Issue: 9774. Thanks to Mathieu Doray. Resolved by jcouteau. o Samples sans data dans l'export acoustic Issue: 9727. Thanks to Mathieu Doray. Resolved by jcouteau. o La suppression d'un voyage/transit/transect ne fonctionne pas Issue: 9687. Thanks to Mathieu Doray. Resolved by jcouteau. o le chapitre calibration est manquant dans l'export acoustic Issue: 9749. Thanks to Mathieu Doray. Resolved by jcouteau. o Lignes biology dupliquées dans l'export biotic Issue: 9735. Thanks to Mathieu Doray. Resolved by jcouteau. o Différences dans les subsamples entre la base et l'export biotic pour PELGAS2015 Issue: 9734. Thanks to Mathieu Doray. Resolved by jcouteau. o Il n'y a que des données associées au SaCategory "D4" dans l'export acoustic Issue: 9736. Thanks to Mathieu Doray. Resolved by jcouteau. o N'exporter vers CIEM que les données biotic de certaines espèces et les opérations qui ont des samples attachés Issue: 9714. Thanks to Mathieu Doray. Resolved by jcouteau. Changes: o Fournir des fichiers de données d'import cohérents pour les tests Issue: 9748. Thanks to Mathieu Doray. Resolved by mdoray. Downloads --------- For a manual installation, you can download files here: https://forge.codelutin.com/projects/echobase/files * echobase-embedded-4.0.14.zip - https://forge.codelutin.com/attachments/download/5119 * echobase-referentiel-4.0.14.echobase - https://forge.codelutin.com/attachments/download/5120 * echobase-ui-4.0.14-full.war - https://forge.codelutin.com/attachments/download/5121 * echobase-ui-4.0.14-lizmap.zip - https://forge.codelutin.com/attachments/download/5122 Maven artifacts --------------- Artifacts are deployed in nuiton maven repository https://nexus.nuiton.org/nexus/content/repositories/other-releases/ Have fun! -EchoBase team

1 0

branch develop updated (1dd70771 -> 9c5df671)
by codelutin.com scm 20 Mar '18

20 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 1dd70771 fixes #9685 : Les fichiers xml biotic et acoustic de thalassa PELGAS2015 ne s'importent plus dans le portail ICES new 9c5df671 [jgitflow-maven-plugin]updating poms for 4.0.15-SNAPSHOT development The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 9c5df671a5edc07c73c4ff376f5c2a54a5a01a9a Author: Maven Release <maven-release(a)codelutin.com> Date: Tue Mar 20 11:11:24 2018 +0100 [jgitflow-maven-plugin]updating poms for 4.0.15-SNAPSHOT development Summary of changes: echobase-domain/pom.xml | 2 +- echobase-services/pom.xml | 2 +- echobase-ui/pom.xml | 2 +- pom.xml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch develop updated (1083a949 -> 1dd70771)
by codelutin.com scm 20 Mar '18

20 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 1083a949 fixes #9778 : Les latitudes et longitudes des logs du fichier acoustic sont égales à zéro new 1dd70771 fixes #9685 : Les fichiers xml biotic et acoustic de thalassa PELGAS2015 ne s'importent plus dans le portail ICES The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 1dd70771b83ba5b56ec32c5e1f037f25eea0254b Author: Jean Couteau <jean.couteau(a)gmail.com> Date: Tue Mar 20 11:03:28 2018 +0100 fixes #9685 : Les fichiers xml biotic et acoustic de thalassa PELGAS2015 ne s'importent plus dans le portail ICES Summary of changes: .../service/atlantos/xml/XmlAccousticExport.java | 6 +- .../service/atlantos/xml/XmlBioticExport.java | 241 ++++++++++----------- 2 files changed, 122 insertions(+), 125 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch develop updated (016cd029 -> 1083a949)
by codelutin.com scm 19 Mar '18

19 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 016cd029 fixes #9774 : Décalage dans ESDUs auxquels sont attribués les résultats NASC par echotypes en base et dans l'export xml acoustic new 1083a949 fixes #9778 : Les latitudes et longitudes des logs du fichier acoustic sont égales à zéro The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 1083a949d82ab94c37cba1ab9f23e7a281c4be2c Author: Jean Couteau <jean.couteau(a)gmail.com> Date: Mon Mar 19 16:09:30 2018 +0100 fixes #9778 : Les latitudes et longitudes des logs du fichier acoustic sont égales à zéro Summary of changes: .../echobase/services/service/atlantos/xml/XmlAccousticExport.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch develop updated (4cc27889 -> 016cd029)
by codelutin.com scm 15 Mar '18

15 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 4cc27889 fixes #9687 : La suppression d'un voyage/transit/transect ne fonctionne pas. new 016cd029 fixes #9774 : Décalage dans ESDUs auxquels sont attribués les résultats NASC par echotypes en base et dans l'export xml acoustic The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 016cd029f37e1f69280ea1db0d137e6f8aaa0dff Author: Jean Couteau <jean.couteau(a)gmail.com> Date: Thu Mar 15 16:59:58 2018 +0100 fixes #9774 : Décalage dans ESDUs auxquels sont attribués les résultats NASC par echotypes en base et dans l'export xml acoustic Summary of changes: .../services/service/atlantos/xml/XmlAccousticExport.java | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch develop updated (24614be9 -> 4cc27889)
by codelutin.com scm 15 Mar '18

15 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 24614be9 Update postgres version to avoid missing am.amcanorder column bug on postgres server >=9.6 new 4cc27889 fixes #9687 : La suppression d'un voyage/transit/transect ne fonctionne pas. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 4cc27889e140b2681cb8e3673af6e339d5437c2c Author: Jean Couteau <jean.couteau(a)gmail.com> Date: Thu Mar 15 09:37:33 2018 +0100 fixes #9687 : La suppression d'un voyage/transit/transect ne fonctionne pas. Force la suppression des transit et transect pour que ça fonctionne sur PG Summary of changes: .../strategy/CommonAllRemoveDataStrategy.java | 37 ++++++++++++++++++++++ 1 file changed, 37 insertions(+) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch develop updated (3653682f -> 24614be9)
by codelutin.com scm 14 Mar '18

14 Mar '18

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 3653682f fixes #9736: Il n'y a que des données associées au SaCategory "D4" dans l'export acoustic new 24614be9 Update postgres version to avoid missing am.amcanorder column bug on postgres server >=9.6 The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 24614be93c7c4010604e38c9f2ac478f906a4e2d Author: Jean Couteau <jean.couteau(a)gmail.com> Date: Wed Mar 14 18:18:24 2018 +0100 Update postgres version to avoid missing am.amcanorder column bug on postgres server >=9.6 Summary of changes: pom.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

01/01: fixes #9736: Il n'y a que des données associées au SaCategory "D4" dans l'export acoustic
by codelutin.com scm 06 Mar '18

06 Mar '18

This is an automated email from the git hooks/post-receive script. New commit to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git commit 3653682fc7ab9133fb22c3857199bf1f4160f811 Author: Jean Couteau <jean.couteau(a)gmail.com> Date: Tue Mar 6 14:57:27 2018 +0100 fixes #9736: Il n'y a que des données associées au SaCategory "D4" dans l'export acoustic Uses voyageName:echotype as vocabulary key instead of voyageCode:echotype --- .../echobase/services/service/atlantos/xml/XmlAccousticExport.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/echobase-services/src/main/java/fr/ifremer/echobase/services/service/atlantos/xml/XmlAccousticExport.java b/echobase-services/src/main/java/fr/ifremer/echobase/services/service/atlantos/xml/XmlAccousticExport.java index afeb6213..7d549567 100644 --- a/echobase-services/src/main/java/fr/ifremer/echobase/services/service/atlantos/xml/XmlAccousticExport.java +++ b/echobase-services/src/main/java/fr/ifremer/echobase/services/service/atlantos/xml/XmlAccousticExport.java @@ -466,7 +466,7 @@ public class XmlAccousticExport implements EchoBaseService { xml.open("Data"); xml.create("SaCategory", - "IDREF", vocabulary.getVocabularyCode(voyage.getCode() + ":" + result.getCategory().getEchotype().getName(),"AC_SaCategory_D4")); + "IDREF", vocabulary.getVocabularyCode(voyage.getName() + ":" + result.getCategory().getEchotype().getName(),"AC_SaCategory_D4")); xml.create("Type", "IDREF", vocabulary.getVocabularyCode("AC_AcousticDataType_C")); xml.create("Unit", -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0