INFO [main] (IsisFish.java:136) main - Starting Isis-Fish 4.4.0.2 with args : [] INFO [main] (IsisFish.java:137) main - Date: 21/11/16 09:52 INFO [main] (IsisFish.java:138) main - Java version: 1.8.0_111-b14, Java HotSpot(TM) 64-Bit Server VM INFO [main] (IsisFish.java:139) main - Plaform/arch: Windows 7/amd64 INFO [main] (IsisFish.java:140) main - R_HOME: C:\Program Files\R\R-3.2.2 INFO [main] (IsisFish.java:141) main - PATH: C:\ProgramData\Oracle\Java\javapath;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files\Intel\WiFi\bin\;C:\Program Files\Common Files\Intel\WirelessCommon\;C:\Program Files (x86)\Pandoc\bin;C:\Program Files\MiKTeX 2.9\miktex\bin\x64\;C:\Program Files\R\R-3.2.2/bin/x64;C:\MinGW64\mingw64\bin;C:\Users\avigier\AppData\Local\Pandoc\;;.; INFO [main] (RUtil.java:122) setJavaLibraryPath - Adding 'C:\Program Files\R\R-3.2.2\library\rJava\jri' to java.library.path INFO [main] (IsisFish.java:354) initVCS - Check state of local repository: C:\Users\avigier\isis-fish-4\isis-database INFO [main] (VCSSVN.java:144) getSVNManager - Try to connect to http://svn.forge.codelutin.com/svn/isis-fish-data INFO [main] (VCSSVN.java:236) isConnected - Connexion au serveur disponible, passage en mode connecté : http://svn.forge.codelutin.com/svn/isis-fish-data INFO [main] (VCSSVN.java:144) getSVNManager - Try to connect to http://svn.forge.codelutin.com/svn/isis-fish-community INFO [main] (VCSSVN.java:236) isConnected - Connexion au serveur disponible, passage en mode connecté : http://svn.forge.codelutin.com/svn/isis-fish-community INFO [main] (IsisFish.java:166) main - after init done in 11.862. INFO [Thread-4] (CronService.java:84) run - Starting 1 registered services INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 4 thread for dans un sous processus INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 17 thread for sur le serveur Caparmor INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 2 thread for dans le même processus INFO [AWT-EventQueue-0] (IsisTray.java:117) getInstance - Use system tray: fr.ifremer.isisfish.IsisTray$AWTSystemTray ERROR [AWT-EventQueue-0] (RProxy.java:101) init - Initialization of R over JNI failed, trying with Network ERROR [AWT-EventQueue-0] (RNetEngine.java:133) init - Unable to establish a connection to the R server. Maybe you forgot to start it. Try using the command "R CMD Rserve". FATAL [AWT-EventQueue-0] (RProxy.java:197) init - The initializing of R failed. WARN [AWT-EventQueue-0] (RConfigHandler.java:128) testRCOnfiguration - Can find call R org.nuiton.j2r.RException: R initialisation failed, please check your installation at org.nuiton.j2r.RProxy.(RProxy.java:67) ~[nuiton-j2r-1.1.jar:?] at fr.ifremer.isisfish.ui.config.RConfigHandler.testRCOnfiguration(RConfigHandler.java:95) [isis-fish-4.4.0.2.jar:?] at fr.ifremer.isisfish.ui.config.RConfigUI.doActionPerformed__on__$JButton0(RConfigUI.java:423) [isis-fish-4.4.0.2.jar:?] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_111] at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_111] at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:257) [jaxx-runtime-2.28.2.jar:2.28.2] at com.sun.proxy.$Proxy18.actionPerformed(Unknown Source) [?:?] at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.DefaultButtonModel.setPressed(Unknown Source) [?:1.8.0_111] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) [?:1.8.0_111] at java.awt.Component.processMouseEvent(Unknown Source) [?:1.8.0_111] at javax.swing.JComponent.processMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.Component.processEvent(Unknown Source) [?:1.8.0_111] at java.awt.Container.processEvent(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Container.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.Container.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Window.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.access$500(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_111] at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$4.run(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$4.run(Unknown Source) [?:1.8.0_111] at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.run(Unknown Source) [?:1.8.0_111] ERROR [AWT-EventQueue-0] (RProxy.java:101) init - Initialization of R over JNI failed, trying with Network ERROR [AWT-EventQueue-0] (RNetEngine.java:133) init - Unable to establish a connection to the R server. Maybe you forgot to start it. Try using the command "R CMD Rserve". FATAL [AWT-EventQueue-0] (RProxy.java:197) init - The initializing of R failed. WARN [AWT-EventQueue-0] (RConfigHandler.java:128) testRCOnfiguration - Can find call R org.nuiton.j2r.RException: R initialisation failed, please check your installation at org.nuiton.j2r.RProxy.(RProxy.java:67) ~[nuiton-j2r-1.1.jar:?] at fr.ifremer.isisfish.ui.config.RConfigHandler.testRCOnfiguration(RConfigHandler.java:95) [isis-fish-4.4.0.2.jar:?] at fr.ifremer.isisfish.ui.config.RConfigUI.doActionPerformed__on__$JButton0(RConfigUI.java:423) [isis-fish-4.4.0.2.jar:?] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_111] at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_111] at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:257) [jaxx-runtime-2.28.2.jar:2.28.2] at com.sun.proxy.$Proxy18.actionPerformed(Unknown Source) [?:?] at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.DefaultButtonModel.setPressed(Unknown Source) [?:1.8.0_111] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) [?:1.8.0_111] at java.awt.Component.processMouseEvent(Unknown Source) [?:1.8.0_111] at javax.swing.JComponent.processMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.Component.processEvent(Unknown Source) [?:1.8.0_111] at java.awt.Container.processEvent(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Container.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.Container.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Window.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.access$500(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_111] at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$4.run(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$4.run(Unknown Source) [?:1.8.0_111] at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.run(Unknown Source) [?:1.8.0_111] ERROR [AWT-EventQueue-0] (RProxy.java:101) init - Initialization of R over JNI failed, trying with Network ERROR [AWT-EventQueue-0] (RNetEngine.java:133) init - Unable to establish a connection to the R server. Maybe you forgot to start it. Try using the command "R CMD Rserve". FATAL [AWT-EventQueue-0] (RProxy.java:197) init - The initializing of R failed. WARN [AWT-EventQueue-0] (RConfigHandler.java:128) testRCOnfiguration - Can find call R org.nuiton.j2r.RException: R initialisation failed, please check your installation at org.nuiton.j2r.RProxy.(RProxy.java:67) ~[nuiton-j2r-1.1.jar:?] at fr.ifremer.isisfish.ui.config.RConfigHandler.testRCOnfiguration(RConfigHandler.java:95) [isis-fish-4.4.0.2.jar:?] at fr.ifremer.isisfish.ui.config.RConfigUI.doActionPerformed__on__$JButton0(RConfigUI.java:423) [isis-fish-4.4.0.2.jar:?] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_111] at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_111] at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:257) [jaxx-runtime-2.28.2.jar:2.28.2] at com.sun.proxy.$Proxy18.actionPerformed(Unknown Source) [?:?] at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) [?:1.8.0_111] at javax.swing.DefaultButtonModel.setPressed(Unknown Source) [?:1.8.0_111] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) [?:1.8.0_111] at java.awt.Component.processMouseEvent(Unknown Source) [?:1.8.0_111] at javax.swing.JComponent.processMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.Component.processEvent(Unknown Source) [?:1.8.0_111] at java.awt.Container.processEvent(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Container.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) [?:1.8.0_111] at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.Container.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Window.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.Component.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.access$500(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_111] at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$4.run(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue$4.run(Unknown Source) [?:1.8.0_111] at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_111] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_111] at java.awt.EventQueue.dispatchEvent(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_111] at java.awt.EventDispatchThread.run(Unknown Source) [?:1.8.0_111]