Build failed in Jenkins: nuiton-j2r #1

25 Jan 2014

      See <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/1/>

------------------------------------------
[...truncated 228 lines...]
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Jan 26, 2014 12:31:29 AM org.nuiton.j2r.jni.RJniEngine init
SEVERE: Cannot find jri library, make sure it is correctly installed
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy init
SEVERE: Initialization of R over JNI failed, trying with Network
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy initOnNet
INFO: Trying to initialize the R Proxy with Network
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.net.RNetEngine init
INFO: Trying to connect to the Rserve on '127.0.0.1:6311'
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.net.RNetEngine init
SEVERE: Unable to establish a connection to the R server. Maybe you forgot to start it. Try using the command "R CMD Rserve".
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy init
SEVERE: The initializing of R failed.
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.JNITest tryREnv
SEVERE: No R environment found to run tests. Skip
Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 sec - in org.nuiton.j2r.JNITest
Running org.nuiton.j2r.NetTest
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy initOnNet
INFO: Trying to initialize the R Proxy with Network
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.net.RNetEngine init
INFO: Trying to connect to the Rserve on '127.0.0.1:6311'
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.net.RNetEngine init
SEVERE: Unable to establish a connection to the R server. Maybe you forgot to start it. Try using the command "R CMD Rserve".
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy init
SEVERE: Initialization of R with Network failed, trying JNI
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy initOnJNI
INFO: Trying to initialize the R Proxy over JNI
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.jni.RNative loadNativeRLibraryFromClasspath
SEVERE: Can't load jri lib dependencies. R not found or not installed
java.lang.UnsatisfiedLinkError: <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/target/surefire-workdir/nuiton-j2r-7280190880260668910.tmp>: libR.so: cannot open shared object file: No such file or directory
	at java.lang.ClassLoader$NativeLibrary.load(Native Method)
	at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1965)
	at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890)
	at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1851)
	at java.lang.Runtime.load0(Runtime.java:795)
	at java.lang.System.load(System.java:1062)
	at org.nuiton.j2r.jni.RNative.loadNativeRLibraryFromClasspath(RNative.java:102)
	at org.nuiton.j2r.jni.RJniEngine.init(RJniEngine.java:87)
	at org.nuiton.j2r.RProxy.initOnJNI(RProxy.java:122)
	at org.nuiton.j2r.RProxy.init(RProxy.java:93)
	at org.nuiton.j2r.RProxy.init(RProxy.java:195)
	at org.nuiton.j2r.RProxy.<init>(RProxy.java:65)
	at org.nuiton.j2r.NetTest.tryREnv(NetTest.java:62)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
	at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:264)
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:124)
	at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:200)
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:153)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Jan 26, 2014 12:31:29 AM org.nuiton.j2r.jni.RJniEngine init
SEVERE: Cannot find jri library, make sure it is correctly installed
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy init
SEVERE: The initializing of R failed.
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.NetTest tryREnv
SEVERE: No R environment found to run tests. Skip
Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0 sec - in org.nuiton.j2r.NetTest
Running org.nuiton.j2r.DataframeTest
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.RProxy initOnNet
INFO: Trying to initialize the R Proxy with Network
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.net.RNetEngine init
INFO: Trying to connect to the Rserve on '127.0.0.1:6311'
Jan 26, 2014 12:31:29 AM org.nuiton.j2r.net.RNetEngine init
SEVERE: Unable to establish a connection to the R server. Maybe you forgot to start it. Try using the command "R CMD Rserve".
Jan 26, 2014 12:31:30 AM org.nuiton.j2r.RProxy init
SEVERE: Initialization of R with Network failed, trying JNI
Jan 26, 2014 12:31:30 AM org.nuiton.j2r.RProxy initOnJNI
INFO: Trying to initialize the R Proxy over JNI
Jan 26, 2014 12:31:30 AM org.nuiton.j2r.jni.RNative loadNativeRLibraryFromClasspath
SEVERE: Can't load jri lib dependencies. R not found or not installed
java.lang.UnsatisfiedLinkError: <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/target/surefire-workdir/nuiton-j2r-4998349338513273737.tmp>: libR.so: cannot open shared object file: No such file or directory
	at java.lang.ClassLoader$NativeLibrary.load(Native Method)
	at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1965)
	at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890)
	at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1851)
	at java.lang.Runtime.load0(Runtime.java:795)
	at java.lang.System.load(System.java:1062)
	at org.nuiton.j2r.jni.RNative.loadNativeRLibraryFromClasspath(RNative.java:102)
	at org.nuiton.j2r.jni.RJniEngine.init(RJniEngine.java:87)
	at org.nuiton.j2r.RProxy.initOnJNI(RProxy.java:122)
	at org.nuiton.j2r.RProxy.init(RProxy.java:93)
	at org.nuiton.j2r.RProxy.init(RProxy.java:195)
	at org.nuiton.j2r.RProxy.<init>(RProxy.java:65)
	at org.nuiton.j2r.DataframeTest.tryREnv(DataframeTest.java:53)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
	at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:264)
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:124)
	at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:200)
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:153)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)

Jan 26, 2014 12:31:30 AM org.nuiton.j2r.jni.RJniEngine init
SEVERE: Cannot find jri library, make sure it is correctly installed
Jan 26, 2014 12:31:30 AM org.nuiton.j2r.RProxy init
SEVERE: The initializing of R failed.
Jan 26, 2014 12:31:30 AM org.nuiton.j2r.DataframeTest tryREnv
SEVERE: No R environment found to run tests. Skip
Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.013 sec - in org.nuiton.j2r.DataframeTest
Running org.nuiton.j2r.JPurTest
[SO]min: 0.0
[SO]avg: 2.6
[SO]max: 11.0
[SO]etype: 4.223742416388576
[V]min: 0.0
[V]avg: 2.9
[V]max: 10.0
[V]etype: 3.047950130825634
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 sec - in org.nuiton.j2r.JPurTest

Results :

Tests run: 6, Failures: 0, Errors: 0, Skipped: 4

[JENKINS] Recording test results
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ nuiton-j2r ---
[INFO] Building jar: <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/target/nuiton-j2r-1.1-SNAPSHOT.jar>
[INFO] 
[INFO] --- maven-site-plugin:3.3:attach-descriptor (attach-descriptor) @ nuiton-j2r ---
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7.947s
[INFO] Finished at: Sun Jan 26 00:31:31 CET 2014
[JENKINS] Archiving disabled
[INFO] Final Memory: 30M/429M
[INFO] ------------------------------------------------------------------------
Waiting for Jenkins to finish collecting data
channel stopped
[trunk] $ /opt/maven3/bin/mvn -f pom.xml -s /var/local/forge/data/nuiton.org/maven/settings.xml -e clean deploy -DperformRelease
[INFO] Error stacktraces are turned on.
[INFO] Scanning for projects...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Nuiton Java-2-R 1.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ nuiton-j2r ---
[INFO] Deleting <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/target>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (ensure-no-container-api) @ nuiton-j2r ---
[INFO] 
[INFO] --- helper-maven-plugin:2.1:check-auto-container (check-central-safe) @ nuiton-j2r ---
[INFO] Will use repository http://repo1.maven.org/maven2/
[INFO] Will use repository http://maven.nuiton.org/central-releases
[INFO] 23 dependencies to check.
[INFO]   23 artifact(s) resolved by repository http://repo1.maven.org/maven2/ in 3.274s
[INFO] All dependencies are safe.
[INFO] 
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (check-project-files) @ nuiton-j2r ---
[INFO] 
[INFO] --- helper-maven-plugin:2.1:share-server-secret (get-redmine-login) @ nuiton-j2r ---
[INFO] Exporting server [redmine-nuiton.org] username in ${redmine.username}
[INFO] Exporting server [redmine-nuiton.org] privateKey in ${redmine.apiKey}
[INFO] 
[INFO] --- license-maven-plugin:1.5:update-project-license (attach-licenses) @ nuiton-j2r ---
[INFO] Will create or update license file [gpl_v3] to <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/LICENSE.txt>
[INFO] 
[INFO] --- license-maven-plugin:1.5:add-third-party (attach-licenses) @ nuiton-j2r ---
[INFO] Load missing file <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/src/license/THIRD-PARTY.properties>
[INFO] Missing file <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/src/license/THIRD-PARTY.properties> is up-to-date.
[INFO] Writing third-party file to <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/target/generated-sources/license/THIRD-PARTY.txt>
[INFO] Will attach third party file from <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/src/license/THIRD-PARTY.properties>
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ nuiton-j2r ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] Copying 2 resources
[INFO] 
[INFO] --- license-maven-plugin:1.5:update-file-header (update-file-header) @ nuiton-j2r ---
[INFO] Will search files to update from root <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/src>
[INFO] Will search files to update from root <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/target/generated-sources>
[INFO] Scan 29 files header done in 203.598ms.
[INFO] All files are up-to-date.
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ nuiton-j2r ---
[INFO] Compiling 12 source files to <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/target/classes>
[WARNING] bootstrap class path not set in conjunction with -source 1.6
[WARNING] <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/src/main/java/org/nuiton/j2r/types/RDataFrame.java>: <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/src/main/java/org/nuiton/j2r/types/RDataFrame.java> uses unchecked or unsafe operations.
[WARNING] <http://ci-ng.nuiton.org/jenkins/job/nuiton-j2r/ws/trunk/src/main/java/org/nuiton/j2r/types/RDataFrame.java>: Recompile with -Xlint:unchecked for details.
[INFO] 
[INFO] --- animal-sniffer-maven-plugin:1.9:check (default) @ nuiton-j2r ---
[INFO] Checking unresolved references to org.codehaus.mojo.signature:java16:1.1
[INFO] 
[INFO] --- jredmine-maven-plugin:1.6:generate-changes (jredmine-generate-changes) @ nuiton-j2r ---
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7.999s
[INFO] Finished at: Sun Jan 26 00:31:41 CET 2014
[INFO] Final Memory: 32M/437M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.nuiton.jredmine:jredmine-maven-plugin:1.6:generate-changes (jredmine-generate-changes) on project nuiton-j2r: the user 'ci' could not be retrieve from redmine server. -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.nuiton.jredmine:jredmine-maven-plugin:1.6:generate-changes (jredmine-generate-changes) on project nuiton-j2r: the user 'ci' could not be retrieve from redmine server.
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:216)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:317)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:152)
	at org.apache.maven.cli.MavenCli.execute(MavenCli.java:555)
	at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:214)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:158)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
	at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
	at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: org.apache.maven.plugin.MojoExecutionException: the user 'ci' could not be retrieve from redmine server.
	at org.nuiton.jredmine.plugin.AbstractRedmineMojo.failIfSafe(AbstractRedmineMojo.java:396)
	at org.nuiton.jredmine.plugin.AbstractRedmineMojoWithProject.init(AbstractRedmineMojoWithProject.java:114)
	at org.nuiton.jredmine.plugin.AbstractRedmineMojoWithProjectAndVersion.init(AbstractRedmineMojoWithProjectAndVersion.java:101)
	at org.nuiton.jredmine.plugin.GenerateChangesMojo.init(GenerateChangesMojo.java:348)
	at org.nuiton.plugin.AbstractPlugin.execute(AbstractPlugin.java:106)
	at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:106)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
	... 19 more
[ERROR] 
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
Build step 'Invoke top-level Maven targets' marked build as failure

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