Author: loic Date: 2013-05-02 18:57:26 +0200 (Thu, 02 May 2013) New Revision: 38 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revisions... Log: sensitivityexport_total_fishing_mortality_relative Added: trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java Added: trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java =================================================================== --- trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java (rev 0) +++ trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java 2013-05-02 16:57:26 UTC (rev 38) @@ -0,0 +1,105 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +package sensitivityexports; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; + +import java.io.Writer; + +import static org.nuiton.i18n.I18n._; + +import org.nuiton.math.matrix.*; + +import scripts.ResultName; + +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; + +import fr.ifremer.isisfish.entities.*; + +import fr.ifremer.isisfish.export.SensitivityExport; + +import fr.ifremer.isisfish.types.TimeStep; + +import fr.ifremer.isisfish.util.Doc; + +public class SensitivityTotalFishingMortalityY2 implements SensitivityExport { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory + .getLog(SensitivityTotalFishingMortalityY2.class); + + protected String[] necessaryResult = { ResultName.MATRIX_TOTAL_FISHING_MORTALITY }; + + @Doc("Population") + public Population param_pop; + + @Override + public void export(SimulationStorage simulation, Writer out) + throws Exception { + ResultStorage resultStorage = simulation.getResultStorage(); + TimeStep lastStep = resultStorage.getLastStep(); + TimeStep firstStep = new TimeStep(11); + double firsttotalFishingMortality = 0.0; + double totalFishingMortality = 0.0; + + for (Population pop : simulation.getParameter().getPopulations()) { + if (pop.getName().equals(param_pop.getName())) { + + //Get the fishing mortality on december of the first year + MatrixND matfirstdate = resultStorage.getMatrix(firstStep, pop, + ResultName.MATRIX_TOTAL_FISHING_MORTALITY); + firsttotalFishingMortality = matfirstdate.sumAll(); + + //Get the fishing mortality of the (last step of) the last year. + MatrixND matlastdate = resultStorage.getMatrix(lastStep, pop, + ResultName.MATRIX_TOTAL_FISHING_MORTALITY); + totalFishingMortality = matlastdate.sumAll(); + + } + } + + out.write(Double.toString(totalFishingMortality / firsttotalFishingMortality)); + } + + @Override + public String getDescription() { + return _("Total fishing mortality for the last year for the population. Total fishing mortality is the mean on zones, representative groups, and the sum of metiers and strategies"); + } + + @Override + public String getExportFilename() { + return "SensitivityTotalFishingMortalityY2_" + param_pop.getName(); + } + + @Override + public String getExtensionFilename() { + return ".csv"; + } + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + +}