[Isis-fish-community-commits] r55 - in trunk: . exports rules sensitivityexports

Author: echatellier Date: 2018-04-05 10:40:29 +0200 (Thu, 05 Apr 2018) New Revision: 55 Url: http://forge.codelutin.com/projects/isis-fish-community/repository/revisions... Log: Remove use of deprecated ResultName. Modified: trunk/exports/BiomasseFeconde.java trunk/exports/MortalitePecheGroupe.java trunk/exports/MortalitePecheTotale.java trunk/pom.xml trunk/rules/GraviteVPUE1_Ponderation.java trunk/rules/HCR_transition_MSY.java trunk/rules/Ogive_de_Tri_Merlu.java trunk/rules/TACpoids20012011.java trunk/rules/TACpoids20012011OgiveTriMerlu.java trunk/rules/TACpoids20012011TailleMin.java trunk/rules/TACpoidsPop.java trunk/rules/TACpoidsPop20082011.java trunk/rules/TACpoidsPop_PourHCR.java trunk/rules/TACpoidsTailleMin.java trunk/sensitivityexports/SensitivityBiomassJanvierY3.java trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java Modified: trunk/exports/BiomasseFeconde.java =================================================================== --- trunk/exports/BiomasseFeconde.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/exports/BiomasseFeconde.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -28,7 +28,7 @@ import org.nuiton.math.matrix.*; -import scripts.ResultName; +import resultinfos.MatrixBiomass; import fr.ifremer.isisfish.entities.*; import fr.ifremer.isisfish.export.Export; @@ -52,7 +52,7 @@ static private Log log = LogFactory.getLog(BiomasseFeconde.class); protected String [] necessaryResult = { - ResultName.MATRIX_BIOMASS + MatrixBiomass.NAME }; @Override @@ -78,7 +78,7 @@ @Override public void export(SimulationStorage simulation, Writer out) throws Exception { for (Population pop : simulation.getParameter().getPopulations()) { - MatrixND mat = simulation.getResultStorage().getMatrix(pop, ResultName.MATRIX_BIOMASS); + MatrixND mat = simulation.getResultStorage().getMatrix(pop, MatrixBiomass.NAME); for (MatrixIterator i=mat.iterator(); i.hasNext();) { i.next(); Object [] sems = i.getSemanticsCoordinates(); Modified: trunk/exports/MortalitePecheGroupe.java =================================================================== --- trunk/exports/MortalitePecheGroupe.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/exports/MortalitePecheGroupe.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2013 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -28,7 +28,9 @@ import org.nuiton.math.matrix.*; -import scripts.ResultName; +import resultinfos.MatrixAbundance; +import resultinfos.MatrixCatchPerStrategyMetPerZonePop; +import resultinfos.MatrixFishingMortalityPerGroup; import fr.ifremer.isisfish.entities.*; import fr.ifremer.isisfish.export.Export; @@ -50,10 +52,11 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(MortalitePecheGroupe.class); - protected String[] necessaryResult = { ResultName.MATRIX_FISHING_MORTALITY_PER_GROUP, - ResultName.MATRIX_CATCH_PER_STRATEGY_MET_PER_ZONE_POP, - ResultName.MATRIX_ABUNDANCE, - }; + protected String[] necessaryResult = { + MatrixFishingMortalityPerGroup.NAME, + MatrixCatchPerStrategyMetPerZonePop.NAME, + MatrixAbundance.NAME + }; @Override public String[] getNecessaryResult() { @@ -85,7 +88,7 @@ for (TimeStep step = new TimeStep(0); !step.after(lastStep); step = step.next()) { MatrixND mat = simulation.getResultStorage().getMatrix(step, - pop, ResultName.MATRIX_FISHING_MORTALITY_PER_GROUP); // group + pop, MatrixFishingMortalityPerGroup.NAME); // group if (mat != null) { // can be null if simulation is stopped before last year simulation for (MatrixIterator i = mat.iterator(); i.hasNext();) { Modified: trunk/exports/MortalitePecheTotale.java =================================================================== --- trunk/exports/MortalitePecheTotale.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/exports/MortalitePecheTotale.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -28,7 +28,10 @@ import org.nuiton.math.matrix.*; -import scripts.ResultName; +import resultinfos.MatrixAbundance; +import resultinfos.MatrixCatchPerStrategyMetPerZonePop; +import resultinfos.MatrixFishingMortalityPerGroup; +import resultinfos.MatrixTotalFishingMortality; import fr.ifremer.isisfish.entities.*; import fr.ifremer.isisfish.export.Export; @@ -50,10 +53,12 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(MortalitePecheTotale.class); - protected String[] necessaryResult = { ResultName.MATRIX_TOTAL_FISHING_MORTALITY, - ResultName.MATRIX_FISHING_MORTALITY_PER_GROUP, - ResultName.MATRIX_CATCH_PER_STRATEGY_MET_PER_ZONE_POP, - ResultName.MATRIX_ABUNDANCE }; + protected String[] necessaryResult = { + MatrixTotalFishingMortality.NAME, + MatrixFishingMortalityPerGroup.NAME, + MatrixCatchPerStrategyMetPerZonePop.NAME, + MatrixAbundance.NAME + }; @Override public String[] getNecessaryResult() { @@ -81,24 +86,22 @@ TimeStep lastStep = simulation.getResultStorage().getLastStep(); for (Population pop : simulation.getParameter().getPopulations()) { - for (TimeStep step = new TimeStep(0); !step.after(lastStep); step = step - .next()) { + for (TimeStep step = new TimeStep(0); !step.after(lastStep); step = step.next()) { MatrixND mat = simulation.getResultStorage().getMatrix(step, - pop, ResultName.MATRIX_TOTAL_FISHING_MORTALITY); + pop, MatrixTotalFishingMortality.NAME); if (mat != null) { // can be null if simulation is stopped before last year simulation for (MatrixIterator i = mat.iterator(); i.hasNext();) { i.next(); - Object[] sems = i.getSemanticsCoordinates(); double val = i.getValue(); out.write(pop.getName() + ";" + step.getStep() + ";" + val + "\n"); - } - } - } - } - } - } + } + } + } + } + } +} Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/pom.xml 2018-04-05 08:40:29 UTC (rev 55) @@ -24,6 +24,9 @@ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> <project.reporting.outputDirectory>UTF-8</project.reporting.outputDirectory> <maven.test.skip>true</maven.test.skip> + <maven.compiler.showDeprecation>true</maven.compiler.showDeprecation> + <maven.compiler.source>1.8</maven.compiler.source> + <maven.compiler.target>1.8</maven.compiler.target> </properties> <organization> @@ -35,21 +38,9 @@ <sourceDirectory>${basedir}</sourceDirectory> <plugins> <plugin> - <artifactId>maven-compiler-plugin</artifactId> - <version>3.5.1</version> - <configuration> - <source>1.7</source> - <target>1.7</target> - <excludes> - <exclude>**/simulations/**</exclude> - <exclude>**/formules/**</exclude> - </excludes> - </configuration> - </plugin> - <plugin> <groupId>org.codehaus.mojo</groupId> <artifactId>exec-maven-plugin</artifactId> - <version>1.4.0</version> + <version>1.6.0</version> <executions> <execution> <goals> Modified: trunk/rules/GraviteVPUE1_Ponderation.java =================================================================== --- trunk/rules/GraviteVPUE1_Ponderation.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/GraviteVPUE1_Ponderation.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -24,7 +24,8 @@ import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import scripts.ResultName; +import resultinfos.MatrixEffortNominalPerStrategyMet; +import resultinfos.MatrixGrossValueOfLandingsPerStrategyMet; import scripts.SiMatrix; import java.util.Arrays; @@ -73,12 +74,9 @@ public String[] necessaryResult = { // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_PER_STRATEGY_MET, - //ResultName.MATRIX_EFFORT_PER_STRATEGY_MET, - ResultName.MATRIX_EFFORT_NOMINAL_PER_STRATEGY_MET, // garder la , + // example: + MatrixGrossValueOfLandingsPerStrategyMet.NAME, + MatrixEffortNominalPerStrategyMet.NAME }; @@ -204,21 +202,17 @@ ////////Initialisation des matrices qui resultent de la simulation//////////////////////////////////////////////////////////// - //Calcul de l effort nominal par strategy met - MatrixND EffortNominalPerStrMet = null; - EffortNominalPerStrMet = resultmanager.getMatrix(step.previousYear(), - ResultName.MATRIX_EFFORT_NOMINAL_PER_STRATEGY_MET); + //Calcul de l effort nominal par strategy met + MatrixND EffortNominalPerStrMet = resultmanager.getMatrix(step.previousYear(), MatrixEffortNominalPerStrategyMet.NAME); //System.out.println("EffortNominalPerStrMet calculee " // + EffortNominalPerStrMet); //on commence par creer une matrice de valeurs (somme sur ttes les especes capturees) par strategie met - MatrixND GrossValuePerStrMet = null; - GrossValuePerStrMet = resultmanager.getMatrix(step.previousYear(), - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_PER_STRATEGY_MET); + MatrixND GrossValuePerStrMet = resultmanager.getMatrix(step.previousYear(), MatrixGrossValueOfLandingsPerStrategyMet.NAME); //System.out.println("GrossValuePerStrMet calculee " + GrossValuePerStrMet); - //ajouter pour tous les metiers les valeurs liees aux autres espèces calculees par modele lineaire + //ajouter pour tous les metiers les valeurs liees aux autres especes calculees par modele lineaire ////////////////////////////////////////////////////////////////////////////////////////////////////////// valuePerUnitOfEffort.map(nanFunction); //reinitialisation avant calcul pour date Modified: trunk/rules/HCR_transition_MSY.java =================================================================== --- trunk/rules/HCR_transition_MSY.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/HCR_transition_MSY.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -26,9 +26,8 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; -import scripts.RuleUtil; -import scripts.SiMatrix; +import resultinfos.MatrixBiomass; +import resultinfos.MatrixTotalFishingMortality; import fr.ifremer.isisfish.datastore.ResultStorage; import fr.ifremer.isisfish.entities.Metier; import fr.ifremer.isisfish.entities.Population; @@ -87,13 +86,10 @@ boolean affectation = false; protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, - ResultName.MATRIX_BIOMASS, - ResultName.MATRIX_TOTAL_FISHING_MORTALITY, - + // put here all necessary result for this rule + // example: + MatrixBiomass.NAME, + MatrixTotalFishingMortality.NAME }; /** @@ -166,12 +162,12 @@ ResultStorage matResult = context.getSimulationStorage().getResultStorage(); // Import de la mortalite par peche de 2010 - MatrixND MatF2010 = matResult.getMatrix(param_beginStep.previous(), param_populationHCR, ResultName.MATRIX_TOTAL_FISHING_MORTALITY); // Ne marche que si param_beginStep est Janvier 2011 + MatrixND MatF2010 = matResult.getMatrix(param_beginStep.previous(), param_populationHCR, MatrixTotalFishingMortality.NAME); // Ne marche que si param_beginStep est Janvier 2011 double F2010 = MatF2010.sumAll(); log.info("F2010 = " + F2010); // Import de la biomasse de l'annee en cours - MatrixND MatBiom = matResult.getMatrix(step.previous(), param_populationHCR, ResultName.MATRIX_BIOMASS); // step, + MatrixND MatBiom = matResult.getMatrix(step.previous(), param_populationHCR, MatrixBiomass.NAME); // step, MatBiom = MatBiom.reduce(); log.info("MatBiom = " + MatBiom); @@ -303,8 +299,7 @@ // // List<Population> populations = Collections.singletonList(pop); // - // MatrixND TacPopMatrix = MatrixFactory.getInstance().create( - // ResultName.MATRIX_TAC_PER_POP, new List[] { populations }, + // MatrixND TacPopMatrix = MatrixFactory.getInstance().create(MatrixTacPerPop.NAME, new List[] { populations }, // new String[] { n_("Populations") }); // // if (step.getMonth() == Month.JANUARY) { // Pas besoin car postAction ne s'applique que si la condition est vraie Modified: trunk/rules/Ogive_de_Tri_Merlu.java =================================================================== --- trunk/rules/Ogive_de_Tri_Merlu.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/Ogive_de_Tri_Merlu.java 2018-04-05 08:40:29 UTC (rev 55) @@ -1,33 +1,40 @@ +/* + * #%L + * IsisFish data + * %% + * Copyright (C) 2017 - 2018 Ifremer, CodeLutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ package rules; -import java.util.List; -import java.util.ArrayList; -import java.util.Iterator; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.nuiton.math.matrix.MatrixIterator; -import org.nuiton.math.matrix.MatrixND; -import org.nuiton.math.matrix.*; -import scripts.ResultName; -import scripts.SiMatrix; - -import fr.ifremer.isisfish.simulator.MetierMonitor; -import fr.ifremer.isisfish.simulator.SimulationContext; -import fr.ifremer.isisfish.types.TimeStep; -import fr.ifremer.isisfish.types.Month; -import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.rule.AbstractRule; -import scripts.ResultName; -import scripts.SiMatrix; import fr.ifremer.isisfish.entities.Metier; import fr.ifremer.isisfish.entities.Population; import fr.ifremer.isisfish.entities.PopulationGroup; import fr.ifremer.isisfish.entities.Species; -import fr.ifremer.isisfish.entities.TargetSpecies; +import fr.ifremer.isisfish.rule.AbstractRule; import fr.ifremer.isisfish.simulator.PopulationMonitor; import fr.ifremer.isisfish.simulator.SimulationContext; -import fr.ifremer.isisfish.simulator.ResultManager; +import fr.ifremer.isisfish.types.TimeStep; import fr.ifremer.isisfish.util.Doc; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixIterator; +import org.nuiton.math.matrix.MatrixND; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; /** * Cette methode remplace aussi TailleMin pour le Merlu dans PecherieGdG @@ -45,7 +52,7 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Ogive_de_Tri_Merlu.class); - @Doc(value = "Begin step") + @Doc(value = "Begin step") public TimeStep param_beginStep = new TimeStep(0); @Doc(value = "End step") @@ -69,10 +76,10 @@ boolean affectation = true; public String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; @Override @@ -165,7 +172,12 @@ Object[] coordonnees = i.getSemanticsCoordinates(); PopulationGroup group = (PopulationGroup) coordonnees[2]; Metier met = (Metier) coordonnees[1]; - if (met.getName().equals("metier lang simp Sud")||met.getName().equals("metier lang simp Nord")||met.getName().equals("metier lang simple")||met.getName().equals("metier lang jum Nord")||met.getName().equals("metier lang jum Sud")||met.getName().equals("metier lang jum")) { + if (met.getName().equals("metier lang simp Sud") || + met.getName().equals("metier lang simp Nord") || + met.getName().equals("metier lang simple") || + met.getName().equals("metier lang jum Nord") || + met.getName().equals("metier lang jum Sud") || + met.getName().equals("metier lang jum")) { double propTrie = 1 / (1 + Math.exp(-(group.getLength() - param_Retention_L50)/ param_Retention_slope)); double propRejet = 1 - propTrie; @@ -193,7 +205,7 @@ } } } - discard.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discard.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discard); } affectation = true; // pour ne pas refaire l'affectation au prochain metier Modified: trunk/rules/TACpoids20012011.java =================================================================== --- trunk/rules/TACpoids20012011.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/TACpoids20012011.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -21,18 +21,6 @@ */ package rules; -import java.util.HashSet; -import java.util.Set; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.nuiton.math.matrix.MatrixIterator; -import org.nuiton.math.matrix.MatrixND; - -import scripts.ResultName; -import scripts.RuleUtil; -import scripts.SiMatrix; -import fr.ifremer.isisfish.datastore.ResultStorage; import fr.ifremer.isisfish.entities.EffortDescription; import fr.ifremer.isisfish.entities.Metier; import fr.ifremer.isisfish.entities.Population; @@ -45,9 +33,19 @@ import fr.ifremer.isisfish.simulator.PopulationMonitor; import fr.ifremer.isisfish.simulator.SimulationContext; import fr.ifremer.isisfish.types.TimeStep; -import fr.ifremer.isisfish.types.Month; import fr.ifremer.isisfish.util.Doc; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixIterator; +import org.nuiton.math.matrix.MatrixND; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; +import resultinfos.MatrixNoActivity; +import scripts.RuleUtil; +import scripts.SiMatrix; +import java.util.HashSet; +import java.util.Set; + /** * TAC peut-etre utilise pour les differents TAC, en proportion des effectifs * et/ou avec survie ou non. @@ -106,10 +104,10 @@ protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; /** @@ -309,7 +307,7 @@ // sinon on met tout dans le metier nonActivite MetierMonitor metierMon = context.getMetierMonitor(); MatrixND mat = metierMon.getOrCreateNoActivity(step, - ResultName.MATRIX_NO_ACTIVITY, siMatrix + MatrixNoActivity.NAME, siMatrix .getStrategies(step), siMatrix .getMetiers(step)); mat.setValue(str, metier, smi.getProportionMetier(metier)); @@ -362,7 +360,7 @@ log.info("catch = " + popMon.getCatch(pop)); MatrixND discardRegle = popMon.getCatch(pop).copy(); //nouvelle instance pour le calcul dans la regle // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop - discardRegle.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discardRegle.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discardRegle); log.info("[TAC] add discard for " + pop + ": " + discardRegle); Modified: trunk/rules/TACpoids20012011OgiveTriMerlu.java =================================================================== --- trunk/rules/TACpoids20012011OgiveTriMerlu.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/TACpoids20012011OgiveTriMerlu.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2016 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,8 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; +import resultinfos.MatrixNoActivity; import scripts.RuleUtil; import scripts.SiMatrix; import fr.ifremer.isisfish.entities.*; @@ -105,10 +106,10 @@ protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; /** @@ -305,7 +306,7 @@ double newProportion; if (somme == 0) { // cas ou aucun autre metier n'est pratique - // on répartit quand meme l'effort equitablement + // on repartit quand meme l'effort equitablement // sur tous les autres metier newProportion = smi.getProportionMetier(metier) / possibleMetier.size(); } else { @@ -325,7 +326,7 @@ // sinon on met tout dans le metier nonActivite MetierMonitor metierMon = context.getMetierMonitor(); MatrixND mat = metierMon.getOrCreateNoActivity(step, - ResultName.MATRIX_NO_ACTIVITY, siMatrix + MatrixNoActivity.NAME, siMatrix .getStrategies(step), siMatrix .getMetiers(step)); mat.setValue(str, metier, smi.getProportionMetier(metier)); @@ -381,7 +382,7 @@ log.info("catch = " + popMon.getCatch(pop)); MatrixND discardRegle = popMon.getCatch(pop).copy(); //nouvelle instance pour le calcul dans la regle // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop - discardRegle.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discardRegle.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discardRegle); log.info("[TAC] add discard for " + pop + ": " + discardRegle); @@ -439,7 +440,7 @@ } } - discard.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discard.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discard); } Modified: trunk/rules/TACpoids20012011TailleMin.java =================================================================== --- trunk/rules/TACpoids20012011TailleMin.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/TACpoids20012011TailleMin.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2016 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,8 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; +import resultinfos.MatrixNoActivity; import scripts.RuleUtil; import scripts.SiMatrix; import fr.ifremer.isisfish.entities.*; @@ -95,19 +96,15 @@ @Doc(value = "param_TailleMin") public double param_TailleMin = 85.0; - - boolean affectation = true; // pour ne passer qu'une seule fois dans afterSimulation (pour le premier metier) boolean tacAtteint = false; // pour ne passer dans beforeSimulation que si le tac est atteint - - protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; /** @@ -322,7 +319,7 @@ // sinon on met tout dans le metier nonActivite MetierMonitor metierMon = context.getMetierMonitor(); MatrixND mat = metierMon.getOrCreateNoActivity(step, - ResultName.MATRIX_NO_ACTIVITY, siMatrix + MatrixNoActivity.NAME, siMatrix .getStrategies(step), siMatrix .getMetiers(step)); mat.setValue(str, metier, smi.getProportionMetier(metier)); @@ -378,7 +375,7 @@ log.info("catch = " + popMon.getCatch(pop)); MatrixND discardRegle = popMon.getCatch(pop).copy(); //nouvelle instance pour le calcul dans la regle // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop - discardRegle.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discardRegle.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discardRegle); log.info("[TAC] add discard for " + pop + ": " + discardRegle); @@ -421,8 +418,7 @@ param_propSurvie); } } - discard.setName( - ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discard.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discard); //} } Modified: trunk/rules/TACpoidsPop.java =================================================================== --- trunk/rules/TACpoidsPop.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/TACpoidsPop.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2016 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,8 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; +import resultinfos.MatrixNoActivity; import scripts.RuleUtil; import scripts.SiMatrix; import fr.ifremer.isisfish.datastore.ResultStorage; @@ -59,7 +60,7 @@ * Last update: $Date: 010812 $ * by : $Author: Loic $ */ -public class TACpoidsPop extends AbstractRule { +public class TACpoidsPop extends AbstractRule { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog( TACpoidsPop.class); @@ -84,10 +85,10 @@ boolean affectation = false; protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; /** @@ -278,7 +279,7 @@ // sinon on met tout dans le metier nonActivite MetierMonitor metierMon = context.getMetierMonitor(); MatrixND mat = metierMon.getOrCreateNoActivity(step, - ResultName.MATRIX_NO_ACTIVITY, siMatrix + MatrixNoActivity.NAME, siMatrix .getStrategies(step), siMatrix .getMetiers(step)); mat.setValue(str, metier, smi.getProportionMetier(metier)); @@ -334,7 +335,7 @@ log.info("catch = " + popMon.getCatch(param_population)); discard = popMon.getCatch(param_population).copy(); // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop - discard.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discard.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, param_population, discard); log.info("[TAC] add discard for " + param_population + ": " + discard); Modified: trunk/rules/TACpoidsPop20082011.java =================================================================== --- trunk/rules/TACpoidsPop20082011.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/TACpoidsPop20082011.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,8 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; +import resultinfos.MatrixNoActivity; import scripts.RuleUtil; import scripts.SiMatrix; import fr.ifremer.isisfish.entities.EffortDescription; @@ -86,10 +87,10 @@ boolean affectation = true; protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; /** @@ -280,7 +281,7 @@ // sinon on met tout dans le metier nonActivite MetierMonitor metierMon = context.getMetierMonitor(); MatrixND mat = metierMon.getOrCreateNoActivity(step, - ResultName.MATRIX_NO_ACTIVITY, siMatrix + MatrixNoActivity.NAME, siMatrix .getStrategies(step), siMatrix .getMetiers(step)); mat.setValue(str, metier, smi.getProportionMetier(metier)); @@ -333,7 +334,7 @@ log.info("catch = " + popMon.getCatch(param_population)); MatrixND discardRegle = popMon.getCatch(param_population).copy(); //nouvelle instance pour le calcul dans la regle // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop - discardRegle.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discardRegle.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, param_population, discardRegle); log.info("[TAC] add discard for " + param_population + ": " + discardRegle); Modified: trunk/rules/TACpoidsPop_PourHCR.java =================================================================== --- trunk/rules/TACpoidsPop_PourHCR.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/TACpoidsPop_PourHCR.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,8 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; +import resultinfos.MatrixNoActivity; import scripts.RuleUtil; import scripts.SiMatrix; import fr.ifremer.isisfish.datastore.ResultStorage; @@ -75,10 +76,10 @@ boolean affectation = false; protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; /** @@ -277,7 +278,7 @@ // sinon on met tout dans le metier nonActivite MetierMonitor metierMon = context.getMetierMonitor(); MatrixND mat = metierMon.getOrCreateNoActivity(step, - ResultName.MATRIX_NO_ACTIVITY, siMatrix + MatrixNoActivity.NAME, siMatrix .getStrategies(step), siMatrix .getMetiers(step)); mat.setValue(str, metier, smi.getProportionMetier(metier)); @@ -333,7 +334,7 @@ log.info("catch = " + popMon.getCatch(param_population)); discard = popMon.getCatch(param_population).copy(); // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop - discard.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discard.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, param_population, discard); log.info("[TAC] add discard for " + param_population + ": " + discard); Modified: trunk/rules/TACpoidsTailleMin.java =================================================================== --- trunk/rules/TACpoidsTailleMin.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/rules/TACpoidsTailleMin.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2011 Ifremer, CodeLutin + * Copyright (C) 2006 - 2018 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,8 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixDiscardsPerStrMetPerZonePop; +import resultinfos.MatrixNoActivity; import scripts.RuleUtil; import scripts.SiMatrix; import fr.ifremer.isisfish.entities.*; @@ -86,10 +87,10 @@ boolean tacAtteint = false; protected String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + // put here all necessary result for this rule + // example: + // MatrixBiomass.NAME, + // MatrixNetValueOfLandingsPerStrategyMet.NAME }; /** @@ -273,7 +274,7 @@ // sinon on met tout dans le metier nonActivite MetierMonitor metierMon = context.getMetierMonitor(); MatrixND mat = metierMon.getOrCreateNoActivity(step, - ResultName.MATRIX_NO_ACTIVITY, siMatrix + MatrixNoActivity.NAME, siMatrix .getStrategies(step), siMatrix .getMetiers(step)); mat.setValue(str, metier, smi.getProportionMetier(metier)); @@ -316,7 +317,7 @@ MatrixND discard = popMon.getCatch(pop).copy(); //on cree une matrice de rejet identique aux captures log.info("catch = " + popMon.getCatch(pop)); // ca ne doit pas pouvoir marcher car MATRIX_DISCARDS_PER_STR_MET est de dimension pop groupe str met - et discard n'a plus la dimension pop - discard.setName(ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discard.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discard); log.info("[TAC] add discard for " + pop + ": "+ discard); if (param_propSurvie > 0) { @@ -359,8 +360,7 @@ param_propSurvie); } } - discard.setName( - ResultName.MATRIX_DISCARDS_PER_STR_MET_PER_ZONE_POP); + discard.setName(MatrixDiscardsPerStrMetPerZonePop.NAME); popMon.addDiscard(step, pop, discard); } } Modified: trunk/sensitivityexports/SensitivityBiomassJanvierY3.java =================================================================== --- trunk/sensitivityexports/SensitivityBiomassJanvierY3.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/sensitivityexports/SensitivityBiomassJanvierY3.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * Copyright (C) 2009 - 2018 Ifremer, Code Lutin, Jean Couteau * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -27,7 +27,7 @@ import org.apache.commons.logging.LogFactory; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixBiomass; import fr.ifremer.isisfish.datastore.ResultStorage; import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.entities.Population; @@ -40,7 +40,9 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(SensitivityBiomassJanvierY3.class); - protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + protected String[] necessaryResult = { + MatrixBiomass.NAME + }; @Doc("Population") public Population param_pop; @@ -56,8 +58,7 @@ if (pop.getName().equals(param_pop.getName())) { //Get the biomass of the last time step - MatrixND matlastJan = resultStorage.getMatrix(janvierLastYear, pop, - ResultName.MATRIX_BIOMASS); + MatrixND matlastJan = resultStorage.getMatrix(janvierLastYear, pop, MatrixBiomass.NAME); biomass = matlastJan.sumAll(); } } Modified: trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java =================================================================== --- trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/sensitivityexports/SensitivityBiomassRelativeJanvierY6.java 2018-04-05 08:40:29 UTC (rev 55) @@ -27,7 +27,7 @@ import org.apache.commons.logging.LogFactory; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixBiomass; import fr.ifremer.isisfish.datastore.ResultStorage; import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.entities.Population; @@ -41,7 +41,9 @@ static private Log log = LogFactory .getLog(SensitivityBiomassRelativeJanvierY6.class); - protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + protected String[] necessaryResult = { + MatrixBiomass.NAME + }; @Doc("Population") public Population param_pop; @@ -60,13 +62,11 @@ if (pop.getName().equals(param_pop.getName())) { //Get the biomass on december of the first year - MatrixND matfirstdate = resultStorage.getMatrix(firstStep, pop, - ResultName.MATRIX_BIOMASS); + MatrixND matfirstdate = resultStorage.getMatrix(firstStep, pop, MatrixBiomass.NAME); firstbiomass = matfirstdate.sumAll(); //Get the biomass on the month of January of the last time step - MatrixND matlastJan = resultStorage.getMatrix(janvierLastYear, pop, - ResultName.MATRIX_BIOMASS); + MatrixND matlastJan = resultStorage.getMatrix(janvierLastYear, pop, MatrixBiomass.NAME); biomass = matlastJan.sumAll(); } Modified: trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java =================================================================== --- trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/sensitivityexports/SensitivitySpawningBiomassJanvierY2.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2009 - 2012 Ifremer, Code Lutin, Jean Couteau, Chatellier Eric + * Copyright (C) 2009 - 2018 Ifremer, Code Lutin, Jean Couteau, Chatellier Eric * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -33,7 +33,7 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixBiomass; import java.io.Writer; @@ -40,10 +40,11 @@ public class SensitivitySpawningBiomassJanvierY2 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory - .getLog(SensitivitySpawningBiomassJanvierY2.class); + static private Log log = LogFactory.getLog(SensitivitySpawningBiomassJanvierY2.class); - protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + protected String[] necessaryResult = { + MatrixBiomass.NAME + }; @Doc("Population") public Population param_pop; @@ -60,8 +61,7 @@ ResultStorage resultStorage = simulation.getResultStorage(); //Get the biomass of the last time step - MatrixND matlastJan = resultStorage.getMatrix(pop, - ResultName.MATRIX_BIOMASS); + MatrixND matlastJan = resultStorage.getMatrix(pop, MatrixBiomass.NAME); for (MatrixIterator i = matlastJan.iterator(); i.hasNext();) { i.next(); Object[] sems = i.getSemanticsCoordinates(); Modified: trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java =================================================================== --- trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/sensitivityexports/SensitivitySpawningBiomassRelativeJanvierY5.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2009 - 2012 Ifremer, Code Lutin, Jean Couteau, Chatellier Eric + * Copyright (C) 2009 - 2018 Ifremer, Code Lutin, Jean Couteau, Chatellier Eric * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -33,7 +33,7 @@ import org.nuiton.math.matrix.MatrixIterator; import org.nuiton.math.matrix.MatrixND; -import scripts.ResultName; +import resultinfos.MatrixBiomass; import java.io.Writer; @@ -40,10 +40,11 @@ public class SensitivitySpawningBiomassRelativeJanvierY5 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory - .getLog(SensitivitySpawningBiomassRelativeJanvierY5.class); + static private Log log = LogFactory.getLog(SensitivitySpawningBiomassRelativeJanvierY5.class); - protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS }; + protected String[] necessaryResult = { + MatrixBiomass.NAME + }; @Doc("Population") public Population param_pop; @@ -62,8 +63,7 @@ ResultStorage resultStorage = simulation.getResultStorage(); //Get the biomass of the first time step - MatrixND matfirstdate = resultStorage.getMatrix(pop, - ResultName.MATRIX_BIOMASS); + MatrixND matfirstdate = resultStorage.getMatrix(pop, MatrixBiomass.NAME); for (MatrixIterator i = matfirstdate.iterator(); i.hasNext();) { i.next(); Object[] sems = i.getSemanticsCoordinates(); @@ -76,8 +76,7 @@ } //Get the biomass of the last time step - MatrixND matlastJan = resultStorage.getMatrix(pop, - ResultName.MATRIX_BIOMASS); + MatrixND matlastJan = resultStorage.getMatrix(pop, MatrixBiomass.NAME); for (MatrixIterator i = matlastJan.iterator(); i.hasNext();) { i.next(); Object[] sems = i.getSemanticsCoordinates(); Modified: trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java =================================================================== --- trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/sensitivityexports/SensitivityTotalFishingMortalityY1.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * Copyright (C) 2009 - 2018 Ifremer, Code Lutin, Jean Couteau * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -28,7 +28,7 @@ import org.nuiton.math.matrix.*; -import scripts.ResultName; +import resultinfos.MatrixTotalFishingMortality; import fr.ifremer.isisfish.datastore.ResultStorage; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -44,10 +44,11 @@ public class SensitivityTotalFishingMortalityY1 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory - .getLog(SensitivityTotalFishingMortalityY1.class); + static private Log log = LogFactory.getLog(SensitivityTotalFishingMortalityY1.class); - protected String[] necessaryResult = { ResultName.MATRIX_TOTAL_FISHING_MORTALITY }; + protected String[] necessaryResult = { + MatrixTotalFishingMortality.NAME + }; @Doc("Population") public Population param_pop; @@ -61,12 +62,9 @@ for (Population pop : simulation.getParameter().getPopulations()) { if (pop.getName().equals(param_pop.getName())) { - - //Get the fishing mortality of the (last step of) the last year. - MatrixND matlastdate = resultStorage.getMatrix(lastStep, pop, - ResultName.MATRIX_TOTAL_FISHING_MORTALITY); - totalFishingMortality = matlastdate.sumAll(); - + //Get the fishing mortality of the (last step of) the last year. + MatrixND matlastdate = resultStorage.getMatrix(lastStep, pop, MatrixTotalFishingMortality.NAME); + totalFishingMortality = matlastdate.sumAll(); } } Modified: trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java =================================================================== --- trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java 2017-05-09 07:54:30 UTC (rev 54) +++ trunk/sensitivityexports/SensitivityTotalFishingMortalityY2.java 2018-04-05 08:40:29 UTC (rev 55) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2009 - 2011 Ifremer, Code Lutin, Jean Couteau + * Copyright (C) 2009 - 2018 Ifremer, Code Lutin, Jean Couteau * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -28,7 +28,7 @@ import org.nuiton.math.matrix.*; -import scripts.ResultName; +import resultinfos.MatrixTotalFishingMortality; import fr.ifremer.isisfish.datastore.ResultStorage; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -44,17 +44,15 @@ public class SensitivityTotalFishingMortalityY2 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory - .getLog(SensitivityTotalFishingMortalityY2.class); + static private Log log = LogFactory.getLog(SensitivityTotalFishingMortalityY2.class); - protected String[] necessaryResult = { ResultName.MATRIX_TOTAL_FISHING_MORTALITY }; + protected String[] necessaryResult = {MatrixTotalFishingMortality.NAME}; @Doc("Population") public Population param_pop; @Override - public void export(SimulationStorage simulation, Writer out) - throws Exception { + public void export(SimulationStorage simulation, Writer out) throws Exception { ResultStorage resultStorage = simulation.getResultStorage(); TimeStep lastStep = resultStorage.getLastStep(); TimeStep firstStep = new TimeStep(11); @@ -63,17 +61,13 @@ for (Population pop : simulation.getParameter().getPopulations()) { if (pop.getName().equals(param_pop.getName())) { + //Get the fishing mortality on december of the first year + MatrixND matfirstdate = resultStorage.getMatrix(firstStep, pop, MatrixTotalFishingMortality.NAME); + firsttotalFishingMortality = matfirstdate.sumAll(); - //Get the fishing mortality on december of the first year - MatrixND matfirstdate = resultStorage.getMatrix(firstStep, pop, - ResultName.MATRIX_TOTAL_FISHING_MORTALITY); - firsttotalFishingMortality = matfirstdate.sumAll(); - - //Get the fishing mortality of the (last step of) the last year. - MatrixND matlastdate = resultStorage.getMatrix(lastStep, pop, - ResultName.MATRIX_TOTAL_FISHING_MORTALITY); - totalFishingMortality = matlastdate.sumAll(); - + //Get the fishing mortality of the (last step of) the last year. + MatrixND matlastdate = resultStorage.getMatrix(lastStep, pop, MatrixTotalFishingMortality.NAME); + totalFishingMortality = matlastdate.sumAll(); } }