[Tutti-commits] r1753 - in trunk: tutti-persistence/src/main/java/fr/ifremer/tutti/persistence tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/resources/pupitri

Author: tchemit Date: 2014-05-05 17:00:37 +0200 (Mon, 05 May 2014) New Revision: 1753 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1753 Log: merge from refs #5032 (version 3.4.1) Added: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java trunk/tutti-service/src/test/resources/pupitri/ano-5032.car trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol Removed: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java trunk/tutti-service/src/test/resources/pupitri/ano-3898.car Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -4,6 +4,7 @@ * #%L * Tutti :: Persistence API * $Id$ + * $Id$ * $HeadURL$ * %% * Copyright (C) 2012 Ifremer @@ -622,28 +623,32 @@ Map<String, Species> map = TuttiEntities.splitByTaxonId(allReferentSpecies); - Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator(); - while (iterator.hasNext()) { - SpeciesProtocol speciesProtocol = iterator.next(); - String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); - Species species = map.get(taxonId); - if (species == null) { - if (log.isWarnEnabled()) { - log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + if (!protocol.isSpeciesEmpty()) { + Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator(); + while (iterator.hasNext()) { + SpeciesProtocol speciesProtocol = iterator.next(); + String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); + Species species = map.get(taxonId); + if (species == null) { + if (log.isWarnEnabled()) { + log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + } + iterator.remove(); } - iterator.remove(); } } - iterator = protocol.getBenthos().iterator(); - while (iterator.hasNext()) { - SpeciesProtocol speciesProtocol = iterator.next(); - String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); - Species species = map.get(taxonId); - if (species == null) { - if (log.isWarnEnabled()) { - log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + if (!protocol.isBenthosEmpty()) { + Iterator<SpeciesProtocol> iterator = protocol.getBenthos().iterator(); + while (iterator.hasNext()) { + SpeciesProtocol speciesProtocol = iterator.next(); + String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); + Species species = map.get(taxonId); + if (species == null) { + if (log.isWarnEnabled()) { + log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + } + iterator.remove(); } - iterator.remove(); } } return protocol; @@ -917,20 +922,24 @@ Map<Integer, String> surveyCodeByTaxonId = Maps.newTreeMap(); - for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) { - String surveyCode = speciesProtocol.getSpeciesSurveyCode(); - if (StringUtils.isNotBlank(surveyCode)) { - Integer taxonId = - speciesProtocol.getSpeciesReferenceTaxonId(); - surveyCodeByTaxonId.put(taxonId, surveyCode); + if (!protocol.isSpeciesEmpty()) { + for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) { + String surveyCode = speciesProtocol.getSpeciesSurveyCode(); + if (StringUtils.isNotBlank(surveyCode)) { + Integer taxonId = + speciesProtocol.getSpeciesReferenceTaxonId(); + surveyCodeByTaxonId.put(taxonId, surveyCode); + } } } - for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) { - String surveyCode = speciesProtocol.getSpeciesSurveyCode(); - if (StringUtils.isNotBlank(surveyCode)) { - Integer taxonId = - speciesProtocol.getSpeciesReferenceTaxonId(); - surveyCodeByTaxonId.put(taxonId, surveyCode); + if (!protocol.isBenthosEmpty()) { + for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) { + String surveyCode = speciesProtocol.getSpeciesSurveyCode(); + if (StringUtils.isNotBlank(surveyCode)) { + Integer taxonId = + speciesProtocol.getSpeciesReferenceTaxonId(); + surveyCodeByTaxonId.put(taxonId, surveyCode); + } } } for (Species species : speciesList) { Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -4,6 +4,7 @@ * #%L * Tutti :: Persistence API * $Id$ + * $Id$ * $HeadURL$ * %% * Copyright (C) 2012 Ifremer @@ -147,6 +148,10 @@ return Multimaps.index(list, GET_REF_TAX_CODE); } + public static Multimap<String, Species> splitBySurveyCode(Iterable<Species> list) { + return Multimaps.index(list, GET_SURVEY_CODE); + } + public static final Function<Species, String> GET_TAXON_ID = new Function<Species, String>() { @Override public String apply(Species input) { @@ -161,6 +166,13 @@ } }; + public static final Function<Species, String> GET_SURVEY_CODE = new Function<Species, String>() { + @Override + public String apply(Species input) { + return String.valueOf(input.getSurveyCode()); + } + }; + public static final Function<TuttiEntity, String> GET_ID = new Function<TuttiEntity, String>() { @Override public String apply(TuttiEntity input) { @@ -515,7 +527,7 @@ public static float roundKiloGram(float value) { BigDecimal sumB = new BigDecimal(value); float result; - if (Math.abs(value - sumB.floatValue())< 0.0001f) { + if (Math.abs(value - sumB.floatValue()) < 0.0001f) { result = value; } else { result = sumB.abs(MATH_CONTEXT_4_DIGIT).floatValue(); Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -25,11 +25,7 @@ */ import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.apache.commons.lang3.StringUtils; -import org.nuiton.csv.ValueParser; -import java.text.ParseException; - /** * @author kmorin <kmorin@codelutin.com> * @since 1.2 @@ -41,13 +37,7 @@ newMandatoryColumn(CarrouselRow.PROPERTY_OPERATION_CODE); newMandatoryColumn(CarrouselRow.PROPERTY_RIG_NUMBER); - newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID, new ValueParser<String>() { - - @Override - public String parse(String string) throws ParseException { - return StringUtils.remove(string, '-').trim(); - } - }); + newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID); newMandatoryColumn(CarrouselRow.PROPERTY_SIGN); newMandatoryColumn(CarrouselRow.PROPERTY_DIRECTION, TuttiCsvUtil.newEnumByNameParserFormatter(Directions.class)); Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -30,7 +30,6 @@ import com.google.common.collect.ListMultimap; import com.google.common.collect.Lists; import com.google.common.collect.Maps; -import com.google.common.collect.Multimaps; import com.google.common.collect.Sets; import fr.ifremer.adagio.core.dao.referential.pmfm.ObjectTypeCode2; import fr.ifremer.adagio.core.dao.referential.pmfm.PmfmId2; @@ -147,7 +146,7 @@ PupitriImportResult result = new PupitriImportResult(trunkFile, carrouselFile); - importPupitriTrunk(result, trunkFile, operation, catchBatch); + importPupitriTrunk(result, trunkFile, operation); importPupitriCarrousel(result, carrouselFile, operation, catchBatch); if (result.isFishingOperationFound()) { @@ -201,9 +200,7 @@ persistenceService.createAttachment(attachment, f); } - protected void importPupitriTrunk(PupitriImportResult result, File file, - FishingOperation operation, - CatchBatch catchBatch) { + protected void importPupitriTrunk(PupitriImportResult result, File file, FishingOperation operation) { if (log.isInfoEnabled()) { log.info("Will import pupitri operation [" + operation.toString() + @@ -272,22 +269,9 @@ // prepare import - //FIXME tchemit-2013-12-02 Explain what does it do ? - // get the map of species by survey code + // get the map of species by survey code or reftax code ListMultimap<String, Species> speciesBySurveyCode = ArrayListMultimap.create(); - - speciesBySurveyCode.putAll( - Multimaps.index(dataContext.getReferentSpeciesWithSurveyCode(), - new Function<Species, String>() { - @Override - public String apply(Species input) { - String surveyCode = String.valueOf(input.getSurveyCode()); - int end = Math.min(surveyCode.length(), 7); - return surveyCode.substring(0, end); - } - } - ) - ); + speciesBySurveyCode.putAll(TuttiEntities.splitBySurveyCode(dataContext.getReferentSpeciesWithSurveyCode())); speciesBySurveyCode.putAll(TuttiEntities.splitByRefTaxCode(dataContext.getReferentSpecies())); // import the batches Copied: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java (from rev 1735, trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java) =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,137 @@ +package fr.ifremer.tutti.service.pupitri; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.TuttiConfigurationOption; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.nuiton.decorator.Decorator; + +import java.io.File; +import java.io.IOException; + +/** + * @author tchemit <chemit@codelutin.com> + * @since 3.0-rc-2 + */ +public class PupitriImportServiceAno3898Test { + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.writeDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_ID = "100003"; + + public static final String OPERATION_1_ID = "100112"; + + public static final String OPERATION_2_ID = "100113"; + + public static final String OPERATION_3_ID = "100115"; + + protected PupitriImportExportService service; + + protected PersistenceService persistenceService; + + protected DecoratorService decoratorService; + + protected ServiceDbResource.DataContext dataContext; + + @Before + public void setUp() throws Exception { + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + decoratorService = serviceContext.getService(DecoratorService.class); + + dbResource.openDataContext(); + + service = serviceContext.getService(PupitriImportExportService.class); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, + OPERATION_2_ID, + OPERATION_1_ID, + OPERATION_3_ID); + } + + @Test + public void importPupitri() throws IOException { + + File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk"); + File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car"); + File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol"); + dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); + TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898"); + persistenceService.setProtocol(protocol1); + + FishingOperation operation = dataContext.operations.get(1); + CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); + catchBatch.setFishingOperation(operation); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); + int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); + Assert.assertEquals(0, nbNotAdded); + BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren()); + + Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); + + for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { + + Integer nbChildren = null; + // species 17003 (MELAAEG) has two childs (SMALL - BIG) + if (17003 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 2; + // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL) + } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 0; + // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL) + } else if (17005 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 0; + } + + if (nbChildren != null) { + Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs()); + } + + } + } +} Added: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,152 @@ +package fr.ifremer.tutti.service.pupitri; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL: https://svn.codelutin.com/tutti/branches/3.3.6/tutti-service/src/test/java/f... $ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Sets; +import fr.ifremer.tutti.TuttiConfigurationOption; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.nuiton.decorator.Decorator; + +import java.io.File; +import java.io.IOException; +import java.util.Set; + +/** + * @author tchemit <chemit@codelutin.com> + * @since 3.0-rc-2 + */ +public class PupitriImportServiceAno5032Test { + + /** Logger. */ + private static final Log log = LogFactory.getLog(PupitriImportServiceAno5032Test.class); + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.writeDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_ID = "100003"; + + public static final String OPERATION_1_ID = "100112"; + + public static final String OPERATION_2_ID = "100113"; + + public static final String OPERATION_3_ID = "100115"; + + protected PupitriImportExportService service; + + protected PersistenceService persistenceService; + + protected DecoratorService decoratorService; + + protected ServiceDbResource.DataContext dataContext; + + @Before + public void setUp() throws Exception { + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + decoratorService = serviceContext.getService(DecoratorService.class); + + dbResource.openDataContext(); + + service = serviceContext.getService(PupitriImportExportService.class); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, + OPERATION_2_ID, + OPERATION_1_ID, + OPERATION_3_ID); + } + + @Test + public void importPupitri() throws IOException { + + File trunk = dbResource.copyClassPathResource("pupitri/ano-5032.tnk", "pupitri.tnk"); + File carroussel = dbResource.copyClassPathResource("pupitri/ano-5032.car", "pupitri.car"); + File protocol = dbResource.copyClassPathResource("pupitri/ano-5032.tuttiProtocol", "ano-5032.tuttiProtocol"); + dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); + TuttiProtocol protocol1 = persistenceService.getProtocol("ano-5032"); + persistenceService.setProtocol(protocol1); + + FishingOperation operation = dataContext.operations.get(1); + CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); + catchBatch.setFishingOperation(operation); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); + int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); + Assert.assertEquals(4, nbNotAdded); + BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(4, rootSpeciesBatchAfter.sizeChildren()); + + Set<Integer> unexpectedSpecies = Sets.newHashSet( + ); + Set<Integer> expectedSpecies = Sets.newHashSet( + 17005, // MERNMER + 17186, // ACATPAL + 16328, // ACAPPEL + 20788 // ASRNATL + ); + + Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); + + for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { + + Species species = speciesBatch.getSpecies(); + Integer speciesId = species.getIdAsInt(); + boolean remove = expectedSpecies.remove(speciesId); + if (log.isInfoEnabled()) { + log.info("Species : " + speciesId + " : " + speciesDecorator.toString(species)); + } + if (!remove) { + unexpectedSpecies.add(speciesId); + if (log.isWarnEnabled()) { + log.warn("Unexpected Species " + speciesId); + } + } + } + + Assert.assertTrue("Expected species not found: " + expectedSpecies, expectedSpecies.isEmpty()); + Assert.assertTrue("Unexpected species found: " + unexpectedSpecies, unexpectedSpecies.isEmpty()); + } +} Property changes on: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Deleted: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -1,138 +0,0 @@ -package fr.ifremer.tutti.service.pupitri; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.TuttiConfigurationOption; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.DecoratorService; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.ServiceDbResource; -import fr.ifremer.tutti.service.TuttiServiceContext; -import org.junit.Assert; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Test; -import org.nuiton.decorator.Decorator; - -import java.io.File; -import java.io.IOException; - -/** - * @author tchemit <chemit@codelutin.com> - * @since 3.0-rc-2 - */ -public class PupitriImportServiceTest { - - @ClassRule - public static final ServiceDbResource dbResource = - ServiceDbResource.writeDb("dbExport"); - - public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; - - public static final String CRUISE_ID = "100003"; - - public static final String OPERATION_1_ID = "100112"; - - public static final String OPERATION_2_ID = "100113"; - - public static final String OPERATION_3_ID = "100115"; - - protected PupitriImportExportService service; - - protected PersistenceService persistenceService; - - protected DecoratorService decoratorService; - - protected ServiceDbResource.DataContext dataContext; - - @Before - public void setUp() throws Exception { - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - persistenceService = serviceContext.getService(PersistenceService.class); - - decoratorService = serviceContext.getService(DecoratorService.class); - - dbResource.openDataContext(); - - service = serviceContext.getService(PupitriImportExportService.class); - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, - OPERATION_2_ID, - OPERATION_1_ID, - OPERATION_3_ID); - } - - @Test - public void importPupitriANO3898() throws IOException { - - File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk"); - File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car"); - File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol"); - dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); - TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898"); - persistenceService.setProtocol(protocol1); - - FishingOperation operation = dataContext.operations.get(1); - CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); - catchBatch.setFishingOperation(operation); - - BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false); - Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); - int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); - Assert.assertEquals(0, nbNotAdded); - BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false); - Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren()); - - Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); - -// int index = 0; - for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { - - Integer nbChildren = null; - // species 17003 (MELAAEG) has two childs (SMALL - BIG) - if (17003 == speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 2; - // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL) - } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 0; - // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL) - }else if (17005== speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 0; - } - - if (nbChildren != null) { - Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs()); - } - - } - } -} Modified: trunk/tutti-service/src/test/resources/pupitri/ano-3898.car =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-3898.car 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/test/resources/pupitri/ano-3898.car 2014-05-05 15:00:37 UTC (rev 1753) @@ -1,381 +1,381 @@ -$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6, 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+$TSMES,27/11/13,19:26:47.870,BLCAR, 0,R0484,1,001,GLYPCYN,0,VAT,0000.2, +$TSMES,27/11/13,19:27:09.223,BLCAR, 0,R0484,1,001,TRISMIN,0,VAT,0000.6, +$TSMES,27/11/13,19:27:29.741,BLCAR, 0,R0484,1,001,ARGESPH,0,VAT,0000.2, +$TSMES,27/11/13,19:27:54.743,BLCAR, 0,R0484,1,001,TRACTRU,0,VAT,0000.2, +$TSMES,27/11/13,19:28:15.821,BLCAR, 0,R0484,1,002,NEPHNOR,0,VAT,0004.3, +$TSMES,27/11/13,19:28:40.581,BLCAR, 0,R0484,1,001,SEPIOLZ,0,VAT,0000.1, +$TSMES,27/11/13,19:29:00.043,BLCAR, 0,R0484,1,001,LOLIFOR,0,VAT,0000.1, +$TSMES,27/11/13,19:29:34.076,BLCAR, 0,R0484,1,001,ROSSMAC,0,VAT,0000.1, +$TSMES,27/11/13,19:30:00.792,BLCAR, 0,R0484,1,001,ELEDCIR,0,VAT,0000.6, +$TSMES,27/11/13,19:30:27.478,BLCAR, 0,R0484,1,001,TODAEBL,0,VAT,0000.1, Copied: trunk/tutti-service/src/test/resources/pupitri/ano-5032.car (from rev 1747, branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.car) =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-5032.car (rev 0) +++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.car 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,8 @@ +$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6, +$TSMES,27/11/13,09:13:21.994,BLCAR, 0,A,1,002,MERLMNG,0,VAT,0018.9, +$TSMES,27/11/13,09:15:12.588,BLCAR, 0,A,1,002,ACAN-PEL,0,VAT,0021.4, +$TSMES,27/11/13,09:15:58.396,BLCAR, 0,A,1,002,ACANPEL,0,VAT,0017.9, +$TSMES,27/11/13,09:17:11.714,BLCAR, 0,A,1,002,ACANPAL,0,VAT,0017.2, +$TSMES,27/11/13,09:17:40.272,BLCAR, 0,A,1,002,ACAN-PAL,0,VAT,0021.1, +$TSMES,27/11/13,09:18:48.818,BLCAR, 0,A,1,002,ASRNATL,0,VAT,0018.0, +$TSMES,27/11/13,09:19:33.335,BLCAR, 0,A,1,002,ASRN-ATL,0,VAT,0016.6, \ No newline at end of file Copied: trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk (from rev 1747, branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tnk) =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk (rev 0) +++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,149 @@ +$TSMES,27/11/13,09:08:45.130,BLTNK, 0,A,1,VAT,0045.4, +$TSMES,27/11/13,09:10:10.522,BLTNK, 0,A,1,VAT,0045.0, +$TSMES,27/11/13,09:12:14.730,BLTNK, 0,A,1,VAT,0043.9, +$TSMES,27/11/13,09:14:06.033,BLTNK, 0,A,1,VAT,0044.0, +$TSMES,27/11/13,09:16:08.907,BLTNK, 0,A,1,VAT,0042.4, +$TSMES,27/11/13,09:17:47.515,BLTNK, 0,A,1,VAT,0044.3, +$TSMES,27/11/13,09:19:44.039,BLTNK, 0,A,1,VAT,0043.6, +$TSMES,27/11/13,09:21:49.166,BLTNK, 0,A,1,VAT,0044.2, +$TSMES,27/11/13,09:26:57.681,BLTNK, 0,A,1,VAT,0045.9, +$TSMES,27/11/13,09:29:20.020,BLTNK, 0,A,1,VAT,0045.8, +$TSMES,27/11/13,09:30:37.535,BLTNK, 0,A,1,VAT,0047.0, +$TSMES,27/11/13,09:32:16.153,BLTNK, 0,A,1,VAT,0046.6, +$TSMES,27/11/13,09:33:30.882,BLTNK, 0,A,1,VAT,0044.4, +$TSMES,27/11/13,09:34:50.649,BLTNK, 0,A,1,VAT,0044.5, +$TSMES,27/11/13,09:36:36.933,BLTNK, 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+$TSMES,27/11/13,19:16:20.308,BLTNK, 0,R0484,1,VNT,0003.7, Added: trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol (rev 0) +++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,81 @@ +id: c6ee2088-9720-46c0-b8d2-8f21c902676f +name: Protocole EVHOE 2013 +benthos: +comment: Protocole pour les tests 2013 avec Jean Jacques Rivoalen +gearUseFeaturePmfmId: +- 131 +- 828 +- 884 +- 965 +lengthClassesPmfmId: +- 306 +- 622 +- 307 +- 302 +- 299 +- 1394 +- 1417 +- 1425 +- 1426 +- 1427 +- 283 +- 284 +- 285 +- 294 +- 295 +- 300 +- 301 +- 304 +- 318 +- 319 +- 322 +- 323 +- 661 +- 662 +species: +- !SpeciesProtocol + id: 2a8122cf-d238-4820-a7b9-eacaf1f302bd + calcifySampleEnabled: true + countIfNoFrequencyEnabled: true + lengthStepPmfmId: 306 + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 1551 + speciesSurveyCode: MERLMNG + weightEnabled: true +- !SpeciesProtocol + id: 0de3f5c9-0ca9-4a7c-84aa-323d9eaa7f7f + countIfNoFrequencyEnabled: true + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 872 + speciesSurveyCode: ACAN-PEL + weightEnabled: true +- !SpeciesProtocol + id: ddffa4c9-cbb5-447f-a829-e2ac0cfea0f5 + countIfNoFrequencyEnabled: true + lengthStepPmfmId: 306 + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 1732 + speciesSurveyCode: ACANPAL + weightEnabled: true +vesselUseFeaturePmfmId: +- 173 +- 194 +- 230 +- 782 +- 843 +- 844 +- 846 +- 847 +- 848 +- 849 +- 850 +- 851 +- 857 +- 858 +- 859 +- 861 +- 862 +- 863 +- 881 +- 882 +- 883